Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50660 706 / 0 unknown protein AT3G20350 612 / 0 unknown protein AT3G11590 159 / 6e-41 unknown protein AT1G11690 114 / 2e-28 unknown protein AT5G22310 92 / 3e-19 unknown protein AT1G64180 85 / 6e-17 intracellular protein transport protein USO1-related (.1) AT2G46250 76 / 3e-14 myosin heavy chain-related (.1) AT1G64690 47 / 2e-05 BLT BRANCHLESS TRICHOMES, branchless trichome (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040076 [exp] 1184 / 0 AT1G50660 756 / 0.0 unknown protein Lus10032637 [exp] 713 / 0 AT1G50660 625 / 0.0 unknown protein Lus10043111 [exp] 680 / 0 AT1G50660 616 / 0.0 unknown protein Lus10021324 [exp] 156 / 3e-39 AT3G11590 530 / 3e-180 unknown protein Lus10017001 [exp] 153 / 1e-38 AT3G11590 587 / 0.0 unknown protein Lus10013311 [exp] 134 / 1e-32 AT3G11590 332 / 1e-105 unknown protein Lus10013312 [exp] 133 / 2e-32 AT3G11590 285 / 1e-88 unknown protein Lus10002069 [exp] 130 / 4e-32 AT1G50660 147 / 6e-38 unknown protein Lus10005200 [exp] 128 / 1e-30 AT3G11590 322 / 1e-101 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G090100 [exp] 719 / 0 AT1G50660 689 / 0.0 unknown protein Potri.004G015800 [exp] 403 / 5e-131 AT1G50660 390 / 1e-126 unknown protein Potri.011G003200 [exp] 379 / 3e-121 AT1G50660 350 / 1e-110 unknown protein Potri.016G074300 [exp] 173 / 1e-45 AT3G11590 560 / 0.0 unknown protein Potri.004G199500 [exp] 170 / 2e-44 AT3G11590 399 / 6e-131 unknown protein Potri.006G207800 [exp] 159 / 1e-40 AT3G11590 582 / 0.0 unknown protein Potri.009G160900 [exp] 150 / 3e-38 AT3G11590 399 / 9e-132 unknown protein Potri.003G135000 [exp] 131 / 2e-31 AT5G41620 494 / 1e-167 unknown protein Potri.001G096200 [exp] 126 / 3e-30 AT5G41620 523 / 6e-180 unknown protein Potri.014G093400 [exp] 119 / 9e-28 AT5G41620 347 / 8e-111 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021521 pacid=23159087 polypeptide=Lus10021521 locus=Lus10021521.g ID=Lus10021521.BGIv1.0 annot-version=v1.0 ATGCTCCACTGCGCACGTGAACAAGGCGGGAAGACCGCACTTCCTTCCCCTGCCACGACGTCGTATTCTAAGCATTGCATAAAGAAGAAAGCTCCCTGTT TTACACCTTTCCTCTACATCCACACTCTCACCCACCCACATCATCAAGGTCCCGCGACCCATTTCACTTTCTGTCTCTCTCTTTCTCGCTTTAGCTCTCT GTACTTCCTCCCCCCCCACCCTCCCCCACAATGCACGCTCTCCTGTAGCTCTACTCACGCAGTCACTACTTCTCACACACTCGTCAGGCAGCACCGCCGC AGGACCCGGAGCCTGACCCGGTTGAAGCGGGTCACGCCTTCTGTCGGGCGGCGAAGCAGACCCGAGACCCCTTTGCTGAAATGGAAAGTTGAGGTGGGCG GTGAGCCAAATGGTGTGGCTGCAGAGCACGAGGACCATACGGTGGCAGAAGAAGATAAGCTTAGTAAGAGTAAAGAGGAGGAGGAGGAGAAGAGAGGAAG GAGGCAGAGGAACAAAAGTGTCAACTCTGTTTCTGCTAGGAAGCTTGCTGCTGGGTTGTGGAGGTTGCAGTCACCGGAGACCGCGGTTGGCGGTGGCGGC TTAGGAGAGCGGAGGAGGAGGGATGGATTGGGTTTTCAGCCAGGGGCAGCTCATGTAGTCCCCCCTCGGACTGAGTCGAAGGATCCATTACACAGCCACG TTCCTTTATCTGGTATGAAGAACAAGTTCTCCTGTAAGCTTGAACCTCCATTCCAGTTTTCTAACTCTGCCATGGAGGGTGCTACCAAGTGGGATCCTGT CTGCTTGGAGACACCAGATGAGGCACGCCAGATATACGGCCACATGAAACAACCTGATCAGCAAGTAACGGCTATATCAATGGTTTCTGCCCTTGAAACT GAGCTTGAACAAGCTCGAGCACGCATCCAGGAGCTCGAAACAGAACGACGATCATCCAAAAAGAAACTTGAGCACTTTCTGAAGAAAGTCAGTGAGGAAA GAGCTGCATGGAGGAGCAGAGAGCATGAGAAAGTTCGTGCATTTATTGATGACGTCAAGACTGATTTAAGTTGTGAAAGGAAAAATCGTCAGAGATTGGA GATTTTGAACTCAAAATTGGTCAATGAGATGGCCGATGCAAAGGTATCAGTGAAGCGACTCATGCAGGACTACGAAAAGGAAAGAAAGAATAGAGAATTG ATTGAGGAAGTGTGTGATGAGCTAGCCAAGGAAATTGGAGATGACAAGGCTGAAATTGAAGCAATAAAGAGGGAATCCATCAACCTGCGGGAAGAAGTAG CTGATGAAAGGAAGATGCTGCAGATGGCTGAGGTATGGCGTGAAGATCGTGTTCAGATGAAGCTGGTCGATGCCAAAGTGGCTCTCGAGGAGAGGTATTC TCAGATGAACAAGCTTGTAACAGATTTGGAAAGTTTTCTAAGTACGAGAGGTGCAATTTCAGAAATTAGACAAGCCGAATCTCTAATGGAGGCTGCAGCC ACCATTGATATTCAAGAAGTAAAGGAGTTCACATATGAGCACTCTAACCCAGATGATATTTTCGCTGTTCTGGAGGAAGTTAACTGTGGTGCGCCAAATG AGAGAGATATTGAACAATGTGCTGCTTTTAGTCCTGCTAGTCGTTCGTCCGAGTCCAATCTAATTACTAAGGACTACAATCACAGACATTCGAATGCTTA TGTGAGTAAGAATGAGGAGATAGAAGAGGAAGAAGAAGATGATGAAAGTGGGTGGGAAACTGTGAGCCATGTTGAGGATCAAGGCTCGAGTTTCTCACCA GATGGAAGTCTTCGATCCGTCGGTAAATATCAGCGGGACAGTAATGTATCAGGGAGTGGCACTGAATGGGAAGACAACATTTGCAAGGAGGTCCCCATGG CAGAAATTGATGAGCTATGTTCTATGCCGCCTAGCAGGCAGTCGAAAAAGGTATCAGCAATTGCAAGGCTCTGGAAGTCTGGCAATAATGGAGAGAACTT GAAAATAATATCAGTTGATGGAATGAATGGTAGGTTCTCAAATGGAAGAAAATCTAGTGCAGGCATTGTATCACCTGAGCAGGGGTCAGTTAAAGACGGA GGAGGAGCATTCAGCCCTTCGGATTTCGTAAATCAATGGAGTTCACCGGAATCAGGGAACCCCCACATAACAAGAGGAATGAAAGGATGCATTGAATGGC CTCGAGGGGTCCAGAAGCACAGTCTGAAGTCAAAGCTGATGGAGGCAAGGATGCAGAACCAGAAACTCCAGCTGCGCCATGTGCTGAAGCAGAAGATTTA G
AA sequence Show only first row Show all	>Lus10021521 pacid=23159087 polypeptide=Lus10021521 locus=Lus10021521.g ID=Lus10021521.BGIv1.0 annot-version=v1.0 MLHCAREQGGKTALPSPATTSYSKHCIKKKAPCFTPFLYIHTLTHPHHQGPATHFTFCLSLSRFSSLYFLPPHPPPQCTLSCSSTHAVTTSHTLVRQHRR RTRSLTRLKRVTPSVGRRSRPETPLLKWKVEVGGEPNGVAAEHEDHTVAEEDKLSKSKEEEEEKRGRRQRNKSVNSVSARKLAAGLWRLQSPETAVGGGG LGERRRRDGLGFQPGAAHVVPPRTESKDPLHSHVPLSGMKNKFSCKLEPPFQFSNSAMEGATKWDPVCLETPDEARQIYGHMKQPDQQVTAISMVSALET ELEQARARIQELETERRSSKKKLEHFLKKVSEERAAWRSREHEKVRAFIDDVKTDLSCERKNRQRLEILNSKLVNEMADAKVSVKRLMQDYEKERKNREL IEEVCDELAKEIGDDKAEIEAIKRESINLREEVADERKMLQMAEVWREDRVQMKLVDAKVALEERYSQMNKLVTDLESFLSTRGAISEIRQAESLMEAAA TIDIQEVKEFTYEHSNPDDIFAVLEEVNCGAPNERDIEQCAAFSPASRSSESNLITKDYNHRHSNAYVSKNEEIEEEEEDDESGWETVSHVEDQGSSFSP DGSLRSVGKYQRDSNVSGSGTEWEDNICKEVPMAEIDELCSMPPSRQSKKVSAIARLWKSGNNGENLKIISVDGMNGRFSNGRKSSAGIVSPEQGSVKDG GGAFSPSDFVNQWSSPESGNPHITRGMKGCIEWPRGVQKHSLKSKLMEARMQNQKLQLRHVLKQKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50660			unknown protein		Lus10021521 [exp]	0	1
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	3.3	0.9382
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	5.8	0.9291
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10010104 [exp]	6.7	0.9189
AT3G58570			P-loop containing nucleoside t...		Lus10001074 [exp]	9.5	0.8762
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10009670 [exp]	9.9	0.9159
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10041728 [exp]	11.3	0.9159
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10020020 [exp]	11.8	0.8964
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10019235 [exp]	12.5	0.8952
AT2G34060			Peroxidase superfamily protein...		Lus10005278 [exp]	12.5	0.9137
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10009323 [exp]	12.8	0.8930

Compare expression of checked genes

Lus10021521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.