Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50670 372 / 3e-133 OTU-like cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040075 [exp] 425 / 4e-154 AT1G50670 368 / 1e-131 OTU-like cysteine protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G435500 [exp] 386 / 1e-138 AT1G50670 374 / 4e-134 OTU-like cysteine protease family protein (.1) Potri.011G139500 [exp] 384 / 3e-137 AT1G50670 361 / 3e-128 OTU-like cysteine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10021522 pacid=23159089 polypeptide=Lus10021522 locus=Lus10021522.g ID=Lus10021522.BGIv1.0 annot-version=v1.0 ATGGACGGAACCGTTGTGAGAAGGGTCATTCCTTCAGACAATTCTTGTCTTTTCAATGCCGTTGGATATGTTATGGATCATAACAAAAATAAAGCTCCTG AACTCAGACAGGTGATAGCCGCAACAGTGGCAAGTGATCCAGTAAAGTATAATGAAGCATTCCTTGGAAAGCCAAATCAAGAATATTGTGCATGGATTCT TGATTCAGAGAAGTGGGGAGGTGCCATTGAGCTTTCAATATTGGCGGATCACTATGGACGTGAAATTGCAGCTTATGACATTCAAACCACTCGATGTGAT TTGTATGGTCAGGACAAGAAGTACTCGGAGAGAGTGATGCTGATATATGATGGCCTGCATTATGATGCTTTAGCTATGTCCCCGTTTGAAGAAGCCCCAG AGGAGTTTGATCAGACTATATTTCCAGTCCAAAAGGACAGGACGATTGGGCTGGTTGAGGGCATAACTCTTAATCTTGTTAGGGATCAACAAAGTAAAAG GAGCTACACAGATACTGCCAACTTCACATTGCGTTGCGGAGTATGCCAGATTGGAGTGATTGGTCAGAAGGAAGCCGTGGAGCATGCACAAGCTACTGGG CATGTCAACTTCCAGGAATATAAATGA
AA sequence Show only first row Show all	>Lus10021522 pacid=23159089 polypeptide=Lus10021522 locus=Lus10021522.g ID=Lus10021522.BGIv1.0 annot-version=v1.0 MDGTVVRRVIPSDNSCLFNAVGYVMDHNKNKAPELRQVIAATVASDPVKYNEAFLGKPNQEYCAWILDSEKWGGAIELSILADHYGREIAAYDIQTTRCD LYGQDKKYSERVMLIYDGLHYDALAMSPFEEAPEEFDQTIFPVQKDRTIGLVEGITLNLVRDQQSKRSYTDTANFTLRCGVCQIGVIGQKEAVEHAQATG HVNFQEYK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	0	1
AT2G26600			Glycosyl hydrolase superfamily...		Lus10038099 [exp]	1.4	0.8350
AT3G56580			RING/U-box superfamily protein...		Lus10001583 [exp]	2.0	0.8422
AT5G53020			Ribonuclease P protein subunit...		Lus10022396 [exp]	3.7	0.8165
AT1G05170			Galactosyltransferase family p...		Lus10039657 [exp]	4.5	0.8234
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10041218 [exp]	6.7	0.8139
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Lus10017712 [exp]	7.1	0.8248
AT2G36410			Family of unknown function (DU...		Lus10014379 [exp]	8.4	0.8016
AT1G61770			Chaperone DnaJ-domain superfam...		Lus10020062 [exp]	8.5	0.8039
AT5G41120			Esterase/lipase/thioesterase f...		Lus10012560 [exp]	8.9	0.8228
AT1G06450			Polynucleotidyl transferase, r...		Lus10017894 [exp]	9.6	0.7798

Compare expression of checked genes

Lus10021522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.