Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20390 230 / 1e-77 endoribonuclease L-PSP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040074 [exp] 322 / 8e-114 AT3G20390 243 / 1e-82 endoribonuclease L-PSP family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G435700 [exp] 250 / 4e-85 AT3G20390 250 / 2e-85 endoribonuclease L-PSP family protein (.1) Potri.011G139600 [exp] 243 / 1e-82 AT3G20390 245 / 2e-83 endoribonuclease L-PSP family protein (.1) Potri.019G019600 [exp] 40 / 0.0008 AT3G04480 941 / 0.0 endoribonucleases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0534 [flax] [poplar] YjgF-like PF01042 [flax] [poplar] Ribonuc_L-PSP Endoribonuclease L-PSP
Representative CDS sequence Show only first row Show all	>Lus10021523 pacid=23159092 polypeptide=Lus10021523 locus=Lus10021523.g ID=Lus10021523.BGIv1.0 annot-version=v1.0 ATGTCAACTTGGACGGTAGCATTCAAGCCATTCTACCACGTGCCATCGCTCCTCAACCATCCGTTCCGGCGCACCCAATTCCCCATCGGCAGCTTCTTCG TGGGCTCCTCCTCCACCTTCTCTCGCTCTCCCCGCCTCCTCCGTCCTCCTTTCGCTTCCTTGAGCTCCTTCACTATTCCCGCTAAAAAGGAGGCTGTTAG GACGGAGAAGGCTCCAGCTGCTCTTGGTCCTTATTCTCAAGCTATCAAGGTCAACAACCTTTTGTTTGTTTCTGGGGTTTTAGGTCTCATTCCGGAGACC GGAAAATTCGTCTCCGAGAATGTTGAAGATCAGACCGAGCAGATTCTTAAGAACATGGGTGAAATTCTAAAAGCTGGAGGTGGAGACTATTCCTCAGTTG TGAAGACGACTATTATGTTGGCTGATTTGGCTGACTTCAAGAAAGTGAATGAGATCTATGCAAAATACTTCCCTGCCCCATTTCCTGCGCGGTCAACATA TCAGGTTGCTGCATTGCCCCTGAATGCCAGGATTGAAATCGAGTGCATTGCTGAACTTCCTCAGAAGATTGAAGCTCAGCCTGTCTAG
AA sequence Show only first row Show all	>Lus10021523 pacid=23159092 polypeptide=Lus10021523 locus=Lus10021523.g ID=Lus10021523.BGIv1.0 annot-version=v1.0 MSTWTVAFKPFYHVPSLLNHPFRRTQFPIGSFFVGSSSTFSRSPRLLRPPFASLSSFTIPAKKEAVRTEKAPAALGPYSQAIKVNNLLFVSGVLGLIPET GKFVSENVEDQTEQILKNMGEILKAGGGDYSSVVKTTIMLADLADFKKVNEIYAKYFPAPFPARSTYQVAALPLNARIEIECIAELPQKIEAQPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	0	1
AT1G06450			Polynucleotidyl transferase, r...		Lus10008043 [exp]	1.4	0.9188
AT2G45250			Integral membrane protein hemo...		Lus10003319 [exp]	1.4	0.9019
AT4G20430			Subtilase family protein (.1.2...		Lus10008060 [exp]	3.5	0.9011
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	4.9	0.9007
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10036802 [exp]	5.7	0.8780
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10021901 [exp]	6.7	0.8741
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	6.7	0.8861
AT5G41270			unknown protein		Lus10035306 [exp]	7.3	0.8630
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10019997 [exp]	8.5	0.8849
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10038804 [exp]	9.8	0.8596

Compare expression of checked genes

Lus10021523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.