Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20395 150 / 3e-45 RING/U-box superfamily protein (.1) AT2G17730 132 / 1e-37 NIP2 NEP-interacting protein 2 (.1.2) AT4G35840 130 / 6e-37 RING/U-box superfamily protein (.1) AT5G66070 127 / 4e-36 RING/U-box superfamily protein (.1.2) AT1G74410 82 / 6e-19 RING/U-box superfamily protein (.1) AT5G43420 72 / 3e-14 RING/U-box superfamily protein (.1) AT2G17450 67 / 1e-13 RHA3A RING-H2 finger A3A (.1) AT3G14320 67 / 2e-13 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT4G10160 67 / 2e-13 RING/U-box superfamily protein (.1) AT1G04360 68 / 4e-13 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040073 [exp] 218 / 5e-72 AT3G20395 94 / 5e-24 RING/U-box superfamily protein (.1) Lus10028406 [exp] 133 / 5e-38 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10041859 [exp] 133 / 5e-38 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10021628 [exp] 74 / 2e-15 AT1G74410 250 / 5e-84 RING/U-box superfamily protein (.1) Lus10001654 [exp] 74 / 2e-15 AT1G74410 251 / 1e-84 RING/U-box superfamily protein (.1) Lus10033425 [exp] 70 / 2e-14 AT3G10910 82 / 6e-20 RING/U-box superfamily protein (.1) Lus10012975 [exp] 70 / 2e-13 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10034953 [exp] 69 / 2e-13 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10023086 [exp] 69 / 2e-13 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G435800 [exp] 216 / 1e-70 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1) Potri.005G108200 [exp] 136 / 2e-39 AT4G35840 369 / 7e-131 RING/U-box superfamily protein (.1) Potri.007G061400 [exp] 132 / 1e-37 AT2G17730 351 / 8e-124 NEP-interacting protein 2 (.1.2) Potri.010G072700 [exp] 71 / 3e-14 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.008G165900 [exp] 69 / 2e-13 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.003G192700 [exp] 66 / 3e-13 AT5G07040 194 / 3e-64 RING/U-box superfamily protein (.1) Potri.008G019000 [exp] 66 / 6e-13 AT5G06490 131 / 8e-39 RING/U-box superfamily protein (.1) Potri.001G159300 [exp] 65 / 6e-13 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1) Potri.018G098000 [exp] 65 / 7e-13 AT2G18670 87 / 6e-22 RING/U-box superfamily protein (.1) Potri.014G076800 [exp] 66 / 9e-13 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10021524 pacid=23159113 polypeptide=Lus10021524 locus=Lus10021524.g ID=Lus10021524.BGIv1.0 annot-version=v1.0 ATGATGGGAAGATGGTTGAGAGAGATGGAGAATTTCTGCATGAGATGTAAAGAAGCCGCAACTTGTTTGTGGTCACTTGATGGGGCAGTGGAGGAGGGTA TTATTGGAGCTTCTTCACTCTTCCTTTCACTACTCACCAACATTCTCCTTGCTTCCCTCACTTGCATCTTTGCTTTAGGAGGTGCTGTAGTTGGCACGAT GGTAGGAGCAATGAAGGGGCAGACAACAGAGACAGGGTTCCTTCGTGGCTCAGTCATAGGCGCTGTTTCTGGTGCCATCACTTCTCTTCAACTCCTCGAA TCCATTTCTGATGGAGAGCAACTCTCCAAGGTGGCGCTATTGAATAGTTTGGTGAGTGGGAAAGTGTTTATGGAATGGGTAGGACCAGCTGTGTTGAAAG CATACCAGTTTCAGATGAGGGCCATGGAAACCACCACTTACAGAGAAATGGGTGATATCTATGACACTAATAATGGGGTCACTGGCTTGCCTCAACATTG CATTCAGACACTACTCCCTCACTTCACTTTACAACTCCAGAGGACTACTGACCAAACCTACCACCTTTCCTGTTCAATCTGCTTACAGGATTTTCAAGGA GGAGAGTTGGCGAGGGAAGTGCCGAGCTGTGGACACTACTTTCATGCGGATTGCCTTGATAACTGGCTCATCAGAAATGCCTCCTGTCCTATGTGTAGGA CTTACGTCTCTAATGATACCTTTCAATTGTAA
AA sequence Show only first row Show all	>Lus10021524 pacid=23159113 polypeptide=Lus10021524 locus=Lus10021524.g ID=Lus10021524.BGIv1.0 annot-version=v1.0 MMGRWLREMENFCMRCKEAATCLWSLDGAVEEGIIGASSLFLSLLTNILLASLTCIFALGGAVVGTMVGAMKGQTTETGFLRGSVIGAVSGAITSLQLLE SISDGEQLSKVALLNSLVSGKVFMEWVGPAVLKAYQFQMRAMETTTYREMGDIYDTNNGVTGLPQHCIQTLLPHFTLQLQRTTDQTYHLSCSICLQDFQG GELAREVPSCGHYFHADCLDNWLIRNASCPMCRTYVSNDTFQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20395			RING/U-box superfamily protein...		Lus10021524 [exp]	0	1
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10004684 [exp]	1.0	0.9630
AT5G06270			unknown protein		Lus10004209 [exp]	1.7	0.9374
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	3.5	0.9436
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10039797 [exp]	4.2	0.9027
AT5G07980			dentin sialophosphoprotein-rel...		Lus10034692 [exp]	4.5	0.9037
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10011051 [exp]	4.5	0.9134
					Lus10007128 [exp]	6.9	0.8814
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10000185 [exp]	8.1	0.8527
AT2G26730			Leucine-rich repeat protein ki...		Lus10001900 [exp]	8.8	0.8784
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10001153 [exp]	9.5	0.8809

Compare expression of checked genes

Lus10021524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.