Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03910 252 / 9e-81 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027605 [exp] 324 / 2e-115 AT1G03910 242 / 4e-77 unknown protein Lus10027730 [exp] 257 / 2e-88 ND 328 / 7e-110 Lus10030000 [exp] 268 / 9e-88 AT1G03910 713 / 0.0 unknown protein Lus10027731 [exp] 266 / 1e-86 AT1G03910 875 / 0.0 unknown protein Lus10035558 [exp] 263 / 3e-85 AT1G03910 870 / 0.0 unknown protein Lus10035559 [exp] 237 / 4e-81 ND 301 / 4e-100 Lus10035324 [exp] 101 / 2e-28 AT1G03910 116 / 4e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118700 [exp] 258 / 5e-83 AT1G03910 849 / 0.0 unknown protein Potri.001G242900 [exp] 192 / 2e-60 AT1G03910 250 / 1e-76 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09732 [flax] [poplar] CactinC_cactus Cactus-binding C-terminus of cactin protein
Representative CDS sequence Show only first row Show all	>Lus10021530 pacid=23159109 polypeptide=Lus10021530 locus=Lus10021530.g ID=Lus10021530.BGIv1.0 annot-version=v1.0 ATGGCATCAAACCCACCAGCGGAGGACAACTTTGAGATGATGGCCAAGGAAGCCATGGGAGTGATGGAGGAAGGCGATGTGGAGTTTGCGTCGTCGGGAG CTGAAGCGAATCTGGACTCTGCAGTTTACGACAAGTACAGACCGATGAAACCAAAGTACTTGATCCGAGTCCACACCGGTTACGAGTGGAACAAGTACAA CCAGAACCACTACGATCATGATAACCCGCCACCAAGGATCGTTCAAGGATACAAGTTCAACATCTTCTACCCGGACCTCATTGACAAGACCAAGACTCCG ACATACACGATTGATAAAGACGATGAGAGCAGGAACGACGAGACGTGCATCATCAGGCTCCATGCGGGACCGCCTTACGAGGACATTTTTTTCCAGATTG TGAACAAGGAGTGCGACTACTCTGACAAGAGGGGGTTCAAGTGCACGTTCGAGAGCGGGATTATGCATCTCTACTTCAACTTCAAACGCCCCCATCGCTA CTGCCGGTGA
AA sequence Show only first row Show all	>Lus10021530 pacid=23159109 polypeptide=Lus10021530 locus=Lus10021530.g ID=Lus10021530.BGIv1.0 annot-version=v1.0 MASNPPAEDNFEMMAKEAMGVMEEGDVEFASSGAEANLDSAVYDKYRPMKPKYLIRVHTGYEWNKYNQNHYDHDNPPPRIVQGYKFNIFYPDLIDKTKTP TYTIDKDDESRNDETCIIRLHAGPPYEDIFFQIVNKECDYSDKRGFKCTFESGIMHLYFNFKRPHRYCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03910			unknown protein		Lus10021530 [exp]	0	1
AT3G19080			SWIB complex BAF60b domain-con...		Lus10009333 [exp]	1.0	0.9697
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10020616 [exp]	5.7	0.9593
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	6.6	0.9629
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	6.9	0.9577
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	6.9	0.9551
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10031361 [exp]	7.0	0.9369
AT1G11320			unknown protein		Lus10017280 [exp]	8.4	0.9500
AT5G22040			unknown protein		Lus10008373 [exp]	11.0	0.9338
AT1G11320			unknown protein		Lus10013574 [exp]	11.2	0.9469
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008189 [exp]	11.3	0.9488

Compare expression of checked genes

Lus10021530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.