Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05710 1427 / 0 ACO3 aconitase 3 (.1) AT4G35830 1389 / 0 ACO1 aconitase 1 (.1.2) AT4G26970 1370 / 0 ACO2 aconitase 2 (.1) AT5G54950 86 / 4e-20 Aconitase family protein (.1) AT4G13430 75 / 1e-13 ATLEUC1, IIL1 isopropyl malate isomerase large subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040070 [exp] 1713 / 0 AT2G05710 1620 / 0.0 aconitase 3 (.1) Lus10015116 [exp] 1424 / 0 AT2G05710 1707 / 0.0 aconitase 3 (.1) Lus10027165 [exp] 1405 / 0 AT2G05710 1706 / 0.0 aconitase 3 (.1) Lus10039678 [exp] 1398 / 0 AT2G05710 1704 / 0.0 aconitase 3 (.1) Lus10031561 [exp] 1387 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Lus10028405 [exp] 1372 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10041858 [exp] 1369 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10032620 [exp] 76 / 9e-14 AT4G13430 772 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Lus10043129 [exp] 75 / 2e-13 AT4G13430 852 / 0.0 isopropyl malate isomerase large subunit 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153400 [exp] 1461 / 0 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.002G229200 [exp] 1443 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Potri.007G060900 [exp] 1396 / 0 AT4G35830 1658 / 0.0 aconitase 1 (.1.2) Potri.005G108100 [exp] 1390 / 0 AT4G35830 1668 / 0.0 aconitase 1 (.1.2) Potri.015G130201 [exp] 129 / 1e-34 AT4G35830 145 / 2e-41 aconitase 1 (.1.2) Potri.010G065100 [exp] 71 / 2e-12 AT4G13430 850 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Potri.008G172500 [exp] 70 / 3e-12 AT4G13430 644 / 0.0 isopropyl malate isomerase large subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF00694 [flax] [poplar] Aconitase_C Aconitase C-terminal domain CL0364 [flax] [poplar] PF00330 [flax] [poplar] Aconitase Aconitase family (aconitate hydratase)
Representative CDS sequence Show only first row Show all	>Lus10021533 pacid=23159080 polypeptide=Lus10021533 locus=Lus10021533.g ID=Lus10021533.BGIv1.0 annot-version=v1.0 ATGCCAATCCATATGTCTACGTCGGCTCCTTGTTCTCCTTCTCTTCTTCGTTCTCGCGTAGCTTCCTGCCGGTTCCCTGTCTCTTTCTCCACTTCCCGTT ATGGCGGTTCCTCTTCCAAATTCACCACTCCTTCTTCTGTTGCTTTCGGTAACCATCAGAATGTTCGGTATCTGAGCTTTTCGTCGTCGTCGTGGTCATT CCGATACTCAGCTCAGCGTAGGAGCAGTAGAGTCGATTGGCGGTCGCCCTTGAGCCTTCGTGCTCATACACGAGCTACTTCCCCTTTTGCTGAGCGGATT GGGAAGTCGATTTCCACTATGGCTTCTGAAAATCCTTTTAAGGGAATATTGACTTCCCTTCCCAAACCTGGGGGTGGGGAGTTTGGGAAATTCTTCAGCT TACCTGCTCTGAATGATCCGCGAATCGATAGGCTTCCATACTCTATACGAATTCTTTTAGAATCAGCTATTCGAAACTGTGATAACTTCCAAGTTACTAA TGATGATGTCGAGAAGATTATTGATTGGGAGAATACATCACCTAACAATGTCGAAATCCCCTTTAAGCCTGCCCGAGTGCTGCTACAGGATTTCACTGGA GTGCCTGCCGTGGTTGACCTTGCTTGTATGCGGGATGCTATGAAGAAACTCGGCAGTGATCCTAAGAAGATCAATCCATTGGTTCCGGTTGACCTTGTTG TTGATCATTCAGTTCAAGTTGATGTAGCAAGAACAGAAAATGCCGTGCAAGCAAACATGGAGCATGAGTTTAGAAGAAACAAGGAGAGATTTGCTTTTCT CAGATGGGGAGCATCTGCTTTCCAAAACATGCTTGTTGTTCCTCCTGGTTCTGGAATTGTACACCAGGTTAATTTGGAGTACCTTGGACGTGTCGTCTTT AACACTGATGGACTTCTCTACCCTGATAGTGTGGTTGGTACGGATTCACATACAACTATGATTAATGGGTTAGGCATTGCTGGCTGGGGAGTTGGGGGAA TCGAAGCAGAAGCCACAATGCTTGGACAGCCCATGAGTATGGTACTCCCTGGTGTTGTTGGTTTCAAGTTGTCTGGTGAATTGCGCGATGGTGTTACAGC AACTGACTTAGTACTGACGGTGACTCAAATGCTGAGGAAACATGGTGTTGTCGGGAAGTTTGTAGAGTTCTATGGTGATGGCATGAGTAGACTATCATTA GCTGATCGGGCTACTATTGCAAATATGTCTCCGGAATATGGAGCAACAATGGGCTTCTTCCCTGTTGATCATGTGACGCTAGAATATCTGAAGCTGACAG GGAGAAGTGATGATACGGTGGAAATGATAGAACAATACCTGCGAGCAAACAAGTTATTTGTTGACTACAGTGAGCCAGAACAAGAGAGATCGTACACGTC ATATATGCATTTGGACCTTGCAGAAGTTGAACCTTGTGTTTCAGGACCAAAGAGACCTCATGATCGTGTACCGTTGAAAGAGATGAAGGATGACTGGAGC GCATGTCTTGGTAACTCAGTTGGCTTCAAAGGATTTGGTATACCGAAGGAAGAGCACGACAAAGTGGAAAAGTTCTCCTTTCATGGACAACCTGCTGAAC TTGCGCATGGGAGTGTTGTCATTGCAGCTATCACAAGTTGTACAAACACGTCAAACCCTAGCGTCATGGTTGGGGCTGGTCTCGTGGCAAAGAAAGCTAG TGAACTTGGGTTACAGGTTAAGCCATGGATTAAAACTAGTCTTGCTCCAGGGTCTGGAGTTGTGACAAAATATTTGCAGAAGAGTGGATTGCTGCGGTAC TTGAATGAGCAAGGTTTTCAGCATGTTGGCTATGGCTGCACAACCTGTATTGGAAATTCCGGGGAGCTTGTTGAATCAGTTGCTTCTGCCATTTCAAACA ACGACATCATTGCTGCAGCAGTTCTCTCTGGAAATCGAAATTTTGAAGGGCGGATTCATCCACTGACAAGAGCTAACTATCTTGCCTCTCCTCCATTAGT TGTTGCCTATGCACTAGCAGGCACGGTCAACATCGACTTTGAAAAGGATCCCATTGGAATTGGGAAAGCTGGAAAAAAGGTTTTCTTTAGGGATATCTGG CCTAGTAATGAAGAGATTGCAGAGGTTGTGCAATCTAGTGTGCTACCGGATATGTTCAGAAGTACGTATGAAGCTATAACGAATGGGAACCACATGTGGA ATGAGCTCAGCATCCCTGCTTCTTTTCTTTACTCATGGGATCCAAAATCTACATACATTCATGAGCCACCATACTTCAAGAATATCAACATGGAACCACC CGGTCCTCACGGGGTGAAGAATGCTTACTGCTTGCTCAAGTTTGGTGACAGTGTAACTACCGATCACATCTCCCCCGCAGGAAGTATTCATAAAGATAGC CCTGCTGCAGCGTACCTTCGATACGACAGCGTGTGGCTCCTCAATGAAGTAGGGCCAATGACTGTACATATTCCGACGGGAGAAAAGCTTCATGTATTTG ACGCAGCAATGAGGTACATGGAAGATGGGCAGGACACGCAAGACACTGTGGTAATAGCTGGAGCAGAATATGGAAGTGGTAGTTCTAGAGACTGGGCTGC CAAAGGTCCAAAGCTGTTGGGAGTGAAAGCCGTAATTGCCAAGAGTTTTGAAAGAATCCACAGAAGCAATCTGGTGGGGATGGGGATCATCCCGCTGTGT TTCAAGGCCAGTGAGGATGCTGAAACGTTAGGACTGACTGGCCGTGAGCGCTACACCATTGACCTTCCAAATAAGATCAGTGAACTGAAGCCTGGACAAG ATGTTACTGTCACCATAGATACCGGCAAGTGTTTCACCTGCAAAGCGCGCTTTGACACAGAGGTTGAGCTGGCCTATTTTGACCATGGAGGAATTCTGCC GTATGTCCTAAGAAACCTAGTTAACACTAAACAATAG
AA sequence Show only first row Show all	>Lus10021533 pacid=23159080 polypeptide=Lus10021533 locus=Lus10021533.g ID=Lus10021533.BGIv1.0 annot-version=v1.0 MPIHMSTSAPCSPSLLRSRVASCRFPVSFSTSRYGGSSSKFTTPSSVAFGNHQNVRYLSFSSSSWSFRYSAQRRSSRVDWRSPLSLRAHTRATSPFAERI GKSISTMASENPFKGILTSLPKPGGGEFGKFFSLPALNDPRIDRLPYSIRILLESAIRNCDNFQVTNDDVEKIIDWENTSPNNVEIPFKPARVLLQDFTG VPAVVDLACMRDAMKKLGSDPKKINPLVPVDLVVDHSVQVDVARTENAVQANMEHEFRRNKERFAFLRWGASAFQNMLVVPPGSGIVHQVNLEYLGRVVF NTDGLLYPDSVVGTDSHTTMINGLGIAGWGVGGIEAEATMLGQPMSMVLPGVVGFKLSGELRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGDGMSRLSL ADRATIANMSPEYGATMGFFPVDHVTLEYLKLTGRSDDTVEMIEQYLRANKLFVDYSEPEQERSYTSYMHLDLAEVEPCVSGPKRPHDRVPLKEMKDDWS ACLGNSVGFKGFGIPKEEHDKVEKFSFHGQPAELAHGSVVIAAITSCTNTSNPSVMVGAGLVAKKASELGLQVKPWIKTSLAPGSGVVTKYLQKSGLLRY LNEQGFQHVGYGCTTCIGNSGELVESVASAISNNDIIAAAVLSGNRNFEGRIHPLTRANYLASPPLVVAYALAGTVNIDFEKDPIGIGKAGKKVFFRDIW PSNEEIAEVVQSSVLPDMFRSTYEAITNGNHMWNELSIPASFLYSWDPKSTYIHEPPYFKNINMEPPGPHGVKNAYCLLKFGDSVTTDHISPAGSIHKDS PAAAYLRYDSVWLLNEVGPMTVHIPTGEKLHVFDAAMRYMEDGQDTQDTVVIAGAEYGSGSSRDWAAKGPKLLGVKAVIAKSFERIHRSNLVGMGIIPLC FKASEDAETLGLTGRERYTIDLPNKISELKPGQDVTVTIDTGKCFTCKARFDTEVELAYFDHGGILPYVLRNLVNTKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05710		ACO3	aconitase 3 (.1)		Lus10021533 [exp]	0	1
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10031956 [exp]	23.9	0.7627
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035744 [exp]	31.3	0.7083
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012030 [exp]	32.3	0.7411
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10026448 [exp]	42.4	0.7390
AT2G30480			unknown protein		Lus10019109 [exp]	53.9	0.6747
AT2G19490			recA DNA recombination family ...		Lus10021585 [exp]	56.9	0.7169
AT2G19710			Regulator of Vps4 activity in ...		Lus10000978 [exp]	62.1	0.7285
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10005988 [exp]	64.4	0.7220
AT2G18750			Calmodulin-binding protein (.1...		Lus10029852 [exp]	68.1	0.7004
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10031508 [exp]	82.8	0.6785

Compare expression of checked genes

Lus10021533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.