Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04640 474 / 5e-168 ATPC1 ATPase, F1 complex, gamma subunit protein (.1) AT1G15700 453 / 8e-160 ATPC2 ATPase, F1 complex, gamma subunit protein (.1) AT2G33040 105 / 1e-25 ATP3 gamma subunit of Mt ATP synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040068 [exp] 696 / 0 AT4G04640 497 / 3e-177 ATPase, F1 complex, gamma subunit protein (.1) Lus10002078 [exp] 464 / 4e-164 AT4G04640 595 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Lus10012200 [exp] 99 / 4e-22 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10042366 [exp] 96 / 4e-22 AT2G33040 508 / 0.0 gamma subunit of Mt ATP synthase (.1) Lus10007534 [exp] 72 / 5e-14 AT2G33040 445 / 3e-159 gamma subunit of Mt ATP synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014850 [exp] 488 / 1e-173 AT4G04640 557 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Potri.011G024700 [exp] 471 / 4e-167 AT4G04640 518 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Potri.011G003800 [exp] 175 / 1e-52 AT4G04640 140 / 2e-39 ATPase, F1 complex, gamma subunit protein (.1) Potri.012G066100 [exp] 96 / 4e-22 AT2G33040 515 / 0.0 gamma subunit of Mt ATP synthase (.1) Potri.015G057700 [exp] 91 / 2e-20 AT2G33040 513 / 0.0 gamma subunit of Mt ATP synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00231 [flax] [poplar] ATP-synt ATP synthase
Representative CDS sequence Show only first row Show all	>Lus10021535 pacid=23159086 polypeptide=Lus10021535 locus=Lus10021535.g ID=Lus10021535.BGIv1.0 annot-version=v1.0 ATGTCCTCTACCAATCTGGCTATGTACATCGTTCCTAAAGCTTGCAAAGTTCACACCTTTGGCTTCTCTTCTGAGTTTCCCCTTTGGAATCGCAAAAATG CTTCGTCTCGGTCTGCACCAATTCGCTGTGGACTCCGTGAGCTGAGAGACCGAATCAAAACAGTCAAAAACACCCAAAAAATTGCCGAGGCAATGAAGTT GGTGTCGGCTGCTAAGGTCCGACGAGCTCAAGAAGCTGTGATCAACGGCAGACCCTTTGCGGAAACCTTATTTGATGTGCTCTATGACATCAACGAACGC CTTCAGTTGGAGGACATTGATGTTCCTTTAACACAAGTTAGGGCTGTGAAGAGAGTTGCCCTTGTGGTTGTTACTGGTGATAGGGGTCTCTGTGGTGGTT TCAACAACGCTGTCTTGAGAAAGGCAGAAACTCGGATGGAGGAATTGGAAAAGATAGGTTTGGATTACTGTGTTATCAGTGCAGGGAAGAAGGGTAATTC GTACTATATGCGAAGGCCTAATGTTTCTGTTGACAGATACATTGAAGGGAACAGTTTCCCAACTGCCAAGGAAGCTCAAATGATTGCCGACGATGTTTTC GCAATGTTTGTCAGTGAAGAGGTTGATAAGGTTGAGCTTGTGTACACTAAGTTTGTGTCGTTGATAAAGTCGGAACCTATTATTCGTACGTTGTTGCCAT TGTCGCCCAGAGGAGGACTCCGTGATGTCAATGGGAACCCTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAAGTAAGCAAGGGAGGTTGTCTGT GGAGAGGGAGAGTAGTGTGAGTGGTAAAAGTGAAGGGCTTTCCCCACTTATGGAGTTTGAGCAGGACCCTGTCCAGATCATTGATGCTATGATGCCACTT TACTTGAACAGCCAGATTTTGAGAGCCCTTCAGGAATCGTACGCTAGTGAACTTGCGTCGAGGATGAACGCGATGAGTAATGCAACCGACAATGCAGTTG AGTTGAACAAGAATCTATCTGTTGCGTATAACAGAGCACGCCAGGCTAAAATCACAGGAGAGTTGTTGGAGATCATTGCTGGAGCTGACGCATTAACAGA TTTGTAA
AA sequence Show only first row Show all	>Lus10021535 pacid=23159086 polypeptide=Lus10021535 locus=Lus10021535.g ID=Lus10021535.BGIv1.0 annot-version=v1.0 MSSTNLAMYIVPKACKVHTFGFSSEFPLWNRKNASSRSAPIRCGLRELRDRIKTVKNTQKIAEAMKLVSAAKVRRAQEAVINGRPFAETLFDVLYDINER LQLEDIDVPLTQVRAVKRVALVVVTGDRGLCGGFNNAVLRKAETRMEELEKIGLDYCVISAGKKGNSYYMRRPNVSVDRYIEGNSFPTAKEAQMIADDVF AMFVSEEVDKVELVYTKFVSLIKSEPIIRTLLPLSPRGGLRDVNGNPVDAAEDEFFRLTSKQGRLSVERESSVSGKSEGLSPLMEFEQDPVQIIDAMMPL YLNSQILRALQESYASELASRMNAMSNATDNAVELNKNLSVAYNRARQAKITGELLEIIAGADALTDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10021535 [exp]	0	1
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Lus10009860 [exp]	1.7	0.8275
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	4.2	0.8202
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	5.7	0.8128
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10003657 [exp]	6.2	0.7482
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	8.0	0.8066
AT3G23020			Tetratricopeptide repeat (TPR)...		Lus10021891 [exp]	8.5	0.7613
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10028486 [exp]	10.0	0.7785
AT3G50420			Pentatricopeptide repeat (PPR)...		Lus10016773 [exp]	14.2	0.6969
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10008580 [exp]	18.0	0.7608
AT5G59500			protein C-terminal S-isoprenyl...		Lus10004974 [exp]	22.1	0.7649

Compare expression of checked genes

Lus10021535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.