Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21970 93 / 6e-24 Protein of unknown function, DUF584 (.1) AT4G04630 88 / 4e-22 Protein of unknown function, DUF584 (.1) AT3G15040 72 / 2e-15 Protein of unknown function, DUF584 (.1) AT2G34340 66 / 8e-14 Protein of unknown function, DUF584 (.1) AT3G45210 66 / 1e-13 Protein of unknown function, DUF584 (.1) AT1G29640 64 / 3e-13 Protein of unknown function, DUF584 (.1) AT2G28400 62 / 3e-12 Protein of unknown function, DUF584 (.1) AT4G26950 61 / 4e-12 Protein of unknown function, DUF584 (.1.2) AT5G60680 61 / 9e-12 Protein of unknown function, DUF584 (.1) AT4G21930 52 / 2e-08 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040067 [exp] 332 / 4e-117 AT4G21970 98 / 2e-25 Protein of unknown function, DUF584 (.1) Lus10006781 [exp] 95 / 2e-24 AT4G21970 128 / 6e-38 Protein of unknown function, DUF584 (.1) Lus10020043 [exp] 94 / 5e-24 AT4G21970 127 / 1e-37 Protein of unknown function, DUF584 (.1) Lus10021474 [exp] 66 / 2e-13 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10000724 [exp] 64 / 7e-13 AT3G45210 111 / 1e-31 Protein of unknown function, DUF584 (.1) Lus10041309 [exp] 63 / 1e-12 AT5G60680 137 / 5e-42 Protein of unknown function, DUF584 (.1) Lus10020047 [exp] 63 / 2e-12 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10002781 [exp] 61 / 3e-12 AT1G29640 103 / 3e-29 Protein of unknown function, DUF584 (.1) Lus10011993 [exp] 61 / 5e-12 AT1G29640 105 / 4e-30 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014000 [exp] 110 / 1e-30 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 103 / 7e-28 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 73 / 3e-16 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 72 / 5e-16 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.016G076300 [exp] 64 / 1e-12 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 62 / 3e-12 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.011G076900 [exp] 60 / 1e-11 AT1G29640 90 / 4e-24 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 60 / 2e-11 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 60 / 3e-11 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 56 / 2e-09 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10021536 pacid=23159101 polypeptide=Lus10021536 locus=Lus10021536.g ID=Lus10021536.BGIv1.0 annot-version=v1.0 ATGAGGCAGGGGAGCGGGGTGTGGAGATGTTTGAGAGACGGTGATTTTCAGGAGCAAGATGTTTGGGATGTGCTGTCGGACATGAAACCTCCAAATTCCA CGATGCTTGAAAATTCGAGAGAAAAAATCTCTGCTCCACCTTGTCTGGTTGTTGGCAGAAACCCTCCCTCAGGCTCAGCCGCCAGAATGATCCAAATTAG CAGTGAAAGCAGCAGTAACGACAATGAAACCAAGTTGATGGTGCAGCATTCAGCCCCAGTCAACATCCATGACTGGTCCAAGATGATGAGCGGCAAAAAG CAGCAGCCGCCCAGGAAAACCTACAAACATTCCAATTCATGGATTGGCTTTGAACTCGATGATGATGAAGAAGATGAATATGAGGGTGATGATATTGATG ATGAGTACGGTAGTAGCTATAATAAGGAGCCGCCACATGAGATGATAGCGAGGAGAATGGCGAGTAGCCAGATTTCGTCGTTTTCTGTGTTTGAAGGAGC TGGAAGGACTCTCAAGGGAAGGGACCTTAGTAAAGTCAGGAATGCCGTTCTCACCAGAACTGGGTTCCTTGAATCTCCTCCATGA
AA sequence Show only first row Show all	>Lus10021536 pacid=23159101 polypeptide=Lus10021536 locus=Lus10021536.g ID=Lus10021536.BGIv1.0 annot-version=v1.0 MRQGSGVWRCLRDGDFQEQDVWDVLSDMKPPNSTMLENSREKISAPPCLVVGRNPPSGSAARMIQISSESSSNDNETKLMVQHSAPVNIHDWSKMMSGKK QQPPRKTYKHSNSWIGFELDDDEEDEYEGDDIDDEYGSSYNKEPPHEMIARRMASSQISSFSVFEGAGRTLKGRDLSKVRNAVLTRTGFLESPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21970			Protein of unknown function, D...		Lus10021536 [exp]	0	1
AT2G19460			Protein of unknown function (D...		Lus10027629 [exp]	4.1	0.9089
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10010572 [exp]	10.2	0.8926
AT1G16670			Protein kinase superfamily pro...		Lus10026503 [exp]	12.5	0.9068
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006353 [exp]	15.3	0.9071
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028555 [exp]	16.7	0.9019
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10016462 [exp]	18.2	0.8618
AT2G14510			Leucine-rich repeat protein ki...		Lus10028407 [exp]	20.9	0.8369
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10017618 [exp]	21.0	0.9004
AT5G19930			Protein of unknown function DU...		Lus10033068 [exp]	21.3	0.8960
AT4G40020			Myosin heavy chain-related pro...		Lus10000283 [exp]	22.7	0.8471

Compare expression of checked genes

Lus10021536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.