Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05170 610 / 0 Galactosyltransferase family protein (.1.2) AT2G32430 603 / 0 Galactosyltransferase family protein (.1) AT4G26940 590 / 0 Galactosyltransferase family protein (.1.2) AT1G77810 478 / 3e-169 Galactosyltransferase family protein (.1.2) AT1G32930 478 / 5e-169 Galactosyltransferase family protein (.1) AT1G11730 474 / 6e-168 Galactosyltransferase family protein (.1) AT1G33430 460 / 4e-162 Galactosyltransferase family protein (.1.2) AT1G22015 444 / 8e-156 DD46 Galactosyltransferase family protein (.1) AT5G53340 218 / 4e-68 Galactosyltransferase family protein (.1.2) AT4G32120 195 / 5e-59 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040062 [exp] 784 / 0 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10027185 [exp] 554 / 0 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10039657 [exp] 534 / 0 AT1G05170 607 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 533 / 0 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10015107 [exp] 531 / 0 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 496 / 5e-176 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10024750 [exp] 496 / 6e-176 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 489 / 2e-173 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 486 / 7e-172 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153700 [exp] 630 / 0 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 625 / 0 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 512 / 0 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 501 / 4e-178 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.011G004200 [exp] 501 / 5e-178 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 489 / 3e-173 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 487 / 2e-172 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.002G089800 [exp] 484 / 1e-171 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.019G067300 [exp] 478 / 2e-168 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 225 / 1e-70 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10021538 pacid=23159097 polypeptide=Lus10021538 locus=Lus10021538.g ID=Lus10021538.BGIv1.0 annot-version=v1.0 ATGAGTTGGAAGAGCAGAGGAGGAGTTGATCAAAGTTCAAAGGGTGTGGTGTCAAAGAAATGGACTTTCTTGCTTTGTATTGGCTGTTTCTGCGTTGGGA TGCTCTTCTCAGACAGAATGTGGTCTGTGCCAGAAGTCGAAGATGTATCGAGCACAATGAAATTTGAAGATGAAAAACTAAAGTTTATTCCAGAAGGATG TGCCCCACAAAATAAAGATGTGAATCATGATTCTAAAGACATAATGGGGGAAGTTTCAAAGACACACGATGCCATACAGACTCTGGATAAGACAATCTCT AGTCTGGAGATGGAATTAGCTGCTGCAAGAGCTACACAGGAATCTATACTTCATGGGTCTCCTGTATCAGACAACTCAAAAATCTCGGAATCAACTGGGA AAAGAAAGTATTTGATGGTTGTAGGTATAAATACTGCTTTTAATAGCAGAAGGCGGAGAGATTCAGTTCGTGAAACATGGATGCTTGTCATAGGTCACAG TGCTACAGCAGGAGGTATTCTGGATAGAGCTGTTGAAGCAGAAGACAGGAAGCATGGTGACTTCTTGAGACTAGAACATGTCGAGGGTTATCTTGAATTA TCTGCAAAGACGAAAACATACTTCGCCACTGCTGTGAGTTTGTGGGATGCAGACTTTTACGTTAAAGTTGACGATGATATCCATGTTAATATAGCTACAC TTGGAGCAACTTTAAGCAGTCACCGAACGAAGCCGAGAGTCTACATAGGCTGTATGAAATCCGGGCCGGTCCTTGCTCAAAAAGGAGTTAAATACCACGA ACCGGAGCATTGGAAATTTGGTGAAGAAGGAAACAAATACTTCCGTCATGCTACTGGACAATTGTATGCCATCTCAAATGACTTGGCTACTTACATATCA ATCAACCAACATGTACTACACAAGTATGTGAATGAAGATGTGTCCCTTGGTGCGTGGTTACTTGGGTTGGACGTGGAGCATATTGATGACAGGAGACTCT GCTGTGGTACCCCACCTGATTGCGAGTGGAAGGCCCAGGCAGGTAATGTGTGTGTTGCCTCGTTTGATTGGAGCTGCAGTGGAATCTGCAAATCTGTTGA GAGGATGAAGGAGGTCCATCGTCGGTGCGGTGAAGGTGAGAATGCATTGTGGAGTGCTGCAGAAAGTTGA
AA sequence Show only first row Show all	>Lus10021538 pacid=23159097 polypeptide=Lus10021538 locus=Lus10021538.g ID=Lus10021538.BGIv1.0 annot-version=v1.0 MSWKSRGGVDQSSKGVVSKKWTFLLCIGCFCVGMLFSDRMWSVPEVEDVSSTMKFEDEKLKFIPEGCAPQNKDVNHDSKDIMGEVSKTHDAIQTLDKTIS SLEMELAAARATQESILHGSPVSDNSKISESTGKRKYLMVVGINTAFNSRRRRDSVRETWMLVIGHSATAGGILDRAVEAEDRKHGDFLRLEHVEGYLEL SAKTKTYFATAVSLWDADFYVKVDDDIHVNIATLGATLSSHRTKPRVYIGCMKSGPVLAQKGVKYHEPEHWKFGEEGNKYFRHATGQLYAISNDLATYIS INQHVLHKYVNEDVSLGAWLLGLDVEHIDDRRLCCGTPPDCEWKAQAGNVCVASFDWSCSGICKSVERMKEVHRRCGEGENALWSAAES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05170			Galactosyltransferase family p...		Lus10021538 [exp]	0	1
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	2.6	0.8979
AT1G21070			Nucleotide-sugar transporter f...		Lus10035824 [exp]	3.5	0.8783
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10024165 [exp]	5.2	0.8358
AT1G21070			Nucleotide-sugar transporter f...		Lus10036606 [exp]	6.6	0.8474
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	7.5	0.8025
AT2G16980			Major facilitator superfamily ...		Lus10023994 [exp]	7.9	0.8520
AT2G43180			Phosphoenolpyruvate carboxylas...		Lus10025529 [exp]	9.2	0.8112
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10040903 [exp]	11.0	0.8333
AT1G28240			Protein of unknown function (D...		Lus10011175 [exp]	12.0	0.8363
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10037994 [exp]	12.6	0.8188

Compare expression of checked genes

Lus10021538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.