Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 350 / 5e-119 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 230 / 4e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 224 / 2e-70 SGNH hydrolase-type esterase superfamily protein (.1) AT5G15720 218 / 1e-67 GLIP7 GDSL-motif lipase 7 (.1) AT3G50400 214 / 5e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75890 213 / 7e-66 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G04290 209 / 2e-64 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT1G71691 205 / 2e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29670 204 / 2e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 204 / 3e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040064 [exp] 491 / 3e-176 AT5G55050 259 / 2e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025105 [exp] 272 / 8e-89 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023979 [exp] 271 / 3e-88 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021543 [exp] 251 / 2e-82 AT5G55050 180 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023980 [exp] 237 / 4e-75 AT5G55050 215 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025104 [exp] 237 / 7e-75 AT5G55050 211 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 231 / 1e-72 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10034459 [exp] 228 / 2e-71 AT1G74460 546 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019095 [exp] 225 / 1e-70 AT1G74460 550 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089700 [exp] 447 / 1e-157 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 230 / 4e-72 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104600 [exp] 226 / 1e-70 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 224 / 4e-70 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G180400 [exp] 222 / 2e-69 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G068700 [exp] 220 / 2e-68 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 219 / 2e-68 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G076500 [exp] 219 / 5e-68 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 218 / 2e-67 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 216 / 4e-67 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10021540 pacid=23159117 polypeptide=Lus10021540 locus=Lus10021540.g ID=Lus10021540.BGIv1.0 annot-version=v1.0 ATGGCAGCAAAGTTGATTCGCTCTGTCAATCAAATTATGGGTTCACCAGTAAAAGTTCTAGTACTGCTGTTGGCATCCGCCGCCGGCCTACTGATGAAGG CGACCTCGACGGAGGGTCAGATGGTGCCGGCGGTGTACGTGTTGGGCGACTCGCTGGTTGATGTCGGGAACAATAATTACTTGGCAGTGTCATTGGCGAA AGCTAATTTCCCGCAGAATGGGATTGATTTCCCAAACAAGAAACCAACAGGAAGGTTCTGTAATGGCAAGAATGCTGCCGACTGGGTTGCTGAGAAATTG GGACTGCCAACTTCACCACCTTACCTATCTGTGAAAAACAAAAATGAGTCTGCTTTCATGAGCGGCGTCAGCTTCGCTTCCGGTGGCGCCGGCATCTTCA ACGGCAGCGACCAACTTCTGCGTCAGTCAATTCCATTGACCAGGCAAGTGGAGGACTACCAATCAGTTTACCAGACATTGATTAAGCAGATGGGGAAGTC AGCAGCAGAAGCCCACATTGCGAAATCCATATTCGCTGTTGTGATTGGAAGTAATGACATTTTTGGGTATTCAAACTCCTCATCTTCACAAAAACAGAGC ACACCACCTCAGATGTTTGTCAATTTGATGGCTACCACCCTCAAAGCACACCTCAAGACACTGTACGCCAATGGGGCACGTAAGTTTGCATTGGCTGGGG TTGGAGCACTTGGTTGCTCCCCAAGAGAAAGGCTCAAAGACACCAAAACCCAGGACTGCAACCAAGACCAAAACTCCATGGCCAGATTGTACAATCAGCA GCTCAACTCAATATTGCAGAGTCTCAAGTCCGAGCTTGGAAATGGCTTCTCCTACTCCTATTTCGACACCTTCTCAATGCTCTACAACATCATTCTAAAC CCATCCCAATTCGGATTTGTGGAAGTGAAAGCAGCATGTTGTGGGCTAGGGGAATTGAGAGCCAAGGTACCATGTCTCCCCATAGCAAACTACTGTTCCA ACAGAAGAGACCATGTGTTTTGGGATCTCTTCCACCCTACAGAAGCATCATATCAGATTCTTATCGATGCTTTCTTTGATGGAACTTCACAGTACACTTA CCCCATTAATCTCAGGCAGCTGGCGTCCGCTTGA
AA sequence Show only first row Show all	>Lus10021540 pacid=23159117 polypeptide=Lus10021540 locus=Lus10021540.g ID=Lus10021540.BGIv1.0 annot-version=v1.0 MAAKLIRSVNQIMGSPVKVLVLLLASAAGLLMKATSTEGQMVPAVYVLGDSLVDVGNNNYLAVSLAKANFPQNGIDFPNKKPTGRFCNGKNAADWVAEKL GLPTSPPYLSVKNKNESAFMSGVSFASGGAGIFNGSDQLLRQSIPLTRQVEDYQSVYQTLIKQMGKSAAEAHIAKSIFAVVIGSNDIFGYSNSSSSQKQS TPPQMFVNLMATTLKAHLKTLYANGARKFALAGVGALGCSPRERLKDTKTQDCNQDQNSMARLYNQQLNSILQSLKSELGNGFSYSYFDTFSMLYNIILN PSQFGFVEVKAACCGLGELRAKVPCLPIANYCSNRRDHVFWDLFHPTEASYQILIDAFFDGTSQYTYPINLRQLASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021540 [exp]	0	1
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	2.0	0.9369
AT5G24130			unknown protein		Lus10039332 [exp]	2.8	0.8999
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10023856 [exp]	3.2	0.8981
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	3.7	0.9110
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10023946 [exp]	4.9	0.8823
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10016413 [exp]	6.0	0.8932
AT2G41480			Peroxidase superfamily protein...		Lus10015555 [exp]	6.5	0.8475
AT2G19130			S-locus lectin protein kinase ...		Lus10029802 [exp]	6.7	0.9023
AT2G44800			2-oxoglutarate (2OG) and Fe(II...		Lus10018949 [exp]	6.7	0.8806
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041050 [exp]	11.8	0.8654

Compare expression of checked genes

Lus10021540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.