Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 116 / 4e-32 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 100 / 4e-26 SGNH hydrolase-type esterase superfamily protein (.1) AT3G14820 94 / 9e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G16230 89 / 1e-22 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 91 / 2e-22 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G18430 91 / 2e-22 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 91 / 2e-22 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 89 / 7e-22 SGNH hydrolase-type esterase superfamily protein (.1) AT3G04290 89 / 8e-22 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT4G28780 87 / 2e-21 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021540 [exp] 149 / 2e-44 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10040065 [exp] 101 / 5e-29 AT5G55050 99 / 4e-26 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025105 [exp] 102 / 5e-27 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 102 / 7e-27 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10028423 [exp] 101 / 2e-26 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023979 [exp] 101 / 2e-26 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028424 [exp] 100 / 2e-26 AT3G14820 298 / 2e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10018641 [exp] 100 / 5e-26 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10023980 [exp] 100 / 5e-26 AT5G55050 215 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089700 [exp] 146 / 7e-44 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 99 / 1e-25 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G067600 [exp] 95 / 4e-24 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G253400 [exp] 95 / 6e-24 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 93 / 2e-23 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G024700 [exp] 91 / 1e-22 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.008G104600 [exp] 89 / 5e-22 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024600 [exp] 89 / 1e-21 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076500 [exp] 88 / 2e-21 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024800 [exp] 87 / 4e-21 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021542 pacid=23159085 polypeptide=Lus10021542 locus=Lus10021542.g ID=Lus10021542.BGIv1.0 annot-version=v1.0 ATGACAACGACGACGTCGGTGGAGGCTCAGAGTCAGACGGTACCGGCGATGTTCGTATTTGGCGACTCATTAGTTGATGTTGGGAACAACAACTATCTTC CGGTGTCGTTTAGCAAAGCAAATTTCCCACATAATGGGATTGATTTTCCCGCCAAGATGCCAACTGGAAGATTCTCTAATGGCAAAAATTCTGCCGACTG GCTTGCTGAGAAGTTGGGGGTGGCAAGTTGCCCACCTTATTTATCAGTGGACAGGAAGAATGGGTCTGCTCTGATTGGCGGCGTCAGCTTCGCATCTGGC GGTGCCCTACTTCTCAACCGTACAATTGATCAGAATCCGTTCCTCTTACGTCTGGCAATTCGGTTAAAATTGGTTACTTGA
AA sequence Show only first row Show all	>Lus10021542 pacid=23159085 polypeptide=Lus10021542 locus=Lus10021542.g ID=Lus10021542.BGIv1.0 annot-version=v1.0 MTTTTSVEAQSQTVPAMFVFGDSLVDVGNNNYLPVSFSKANFPHNGIDFPAKMPTGRFSNGKNSADWLAEKLGVASCPPYLSVDRKNGSALIGGVSFASG GALLLNRTIDQNPFLLRLAIRLKLVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021542 [exp]	0	1
					Lus10028027 [exp]	3.5	0.8848
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10016266 [exp]	4.6	0.7698
					Lus10026021 [exp]	5.2	0.7521
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10025183 [exp]	6.3	0.8624
AT2G26850			F-box family protein (.1)		Lus10036444 [exp]	62.9	0.7133
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Lus10043383 [exp]	68.9	0.6704
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	87.1	0.6749
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	87.3	0.6749
					Lus10035508 [exp]	87.5	0.6749
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	87.7	0.6749

Compare expression of checked genes

Lus10021542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.