Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 180 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 140 / 2e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G50400 139 / 4e-39 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 135 / 6e-38 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G10950 133 / 8e-37 SGNH hydrolase-type esterase superfamily protein (.1) AT5G08460 132 / 1e-36 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 130 / 4e-36 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 125 / 4e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 125 / 6e-34 SGNH hydrolase-type esterase superfamily protein (.1) AT5G22810 124 / 8e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040064 [exp] 261 / 4e-88 AT5G55050 259 / 2e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021540 [exp] 251 / 2e-82 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023979 [exp] 146 / 5e-42 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025105 [exp] 145 / 2e-41 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 142 / 2e-40 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034459 [exp] 138 / 5e-39 AT1G74460 546 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019095 [exp] 138 / 5e-39 AT1G74460 550 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025104 [exp] 136 / 3e-38 AT5G55050 211 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023980 [exp] 134 / 2e-37 AT5G55050 215 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089700 [exp] 258 / 2e-85 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G068700 [exp] 135 / 9e-38 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 133 / 8e-37 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 130 / 8e-36 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 129 / 3e-35 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G064500 [exp] 128 / 4e-35 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 126 / 2e-34 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G067600 [exp] 126 / 3e-34 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G180400 [exp] 124 / 9e-34 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G076600 [exp] 124 / 1e-33 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10021543 pacid=23159096 polypeptide=Lus10021543 locus=Lus10021543.g ID=Lus10021543.BGIv1.0 annot-version=v1.0 ATGGCGGAGCAAGTAAGCTACTATGAAGCAGCATATAAGCAGATAGTGAATGAAAGTAGTATCATGGAAGCACAAGACCGTATATCTAAATCCATATTTG TCATTGTTATTGGAAGCAACGATATTTTCAGGTATTCCAACTCATCGTCCTTCCTGAAGCAGACCACTCCACCTCAGCAATTTACAACTCTCATGGCTCT TACCCTAAAAGATCACCTAAAGAAATTATACGAATGTGGGGCACGTAAGTTTGTAGTGGCTGGGGTGCCACCATTGGGTTGCACTCCAAAAGAGAGGATC AAATCCCAAACTCAAGAGTGCAATGAAGGAGGCAACTCAATGGCCATCATGTACAATCAGAATGTTAAGTCGGTTTTGGGAGATCTCATCATCAAATCAC AACTCTTCAATGCTTCATACTCCTACTTGGATACCTTCACTTTGGTGCAGGACTTCTTCCAAAGGCCAGCCTACTATGGATTTAGGGAGGTGAAAGAGGC ATGTTGTGGGCTTGGGAAACTGAGATCAGAAGTGCCGTGTACACCAATTTCATTGTGCTGCGAGAATAGAAGCGATCATGTGTTTTGGGATTTCGTTCAT CCTACTGAAGCAGCTGCCAGAATCCTTATTGATTCTTTCTTTGATCCACCAGCTGCTGCCAATAACACATTCCCCATCAACCTCCGCCAGCTTCTAGCAG TTTAA
AA sequence Show only first row Show all	>Lus10021543 pacid=23159096 polypeptide=Lus10021543 locus=Lus10021543.g ID=Lus10021543.BGIv1.0 annot-version=v1.0 MAEQVSYYEAAYKQIVNESSIMEAQDRISKSIFVIVIGSNDIFRYSNSSSFLKQTTPPQQFTTLMALTLKDHLKKLYECGARKFVVAGVPPLGCTPKERI KSQTQECNEGGNSMAIMYNQNVKSVLGDLIIKSQLFNASYSYLDTFTLVQDFFQRPAYYGFREVKEACCGLGKLRSEVPCTPISLCCENRSDHVFWDFVH PTEAAARILIDSFFDPPAAANNTFPINLRQLLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	0	1
					Lus10000351 [exp]	1.4	1.0000
					Lus10002886 [exp]	2.0	1.0000
					Lus10014748 [exp]	3.0	1.0000
AT3G26880			Plant self-incompatibility pro...		Lus10022631 [exp]	3.5	1.0000
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10022782 [exp]	3.9	1.0000
					Lus10023108 [exp]	4.2	1.0000
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10023249 [exp]	4.6	1.0000
					Lus10024321 [exp]	4.9	1.0000
AT2G02850		ARPN	plantacyanin (.1)		Lus10028396 [exp]	5.2	1.0000
AT2G46530	ARF	ARF11	auxin response factor 11 (.1.2...		Lus10030240 [exp]	5.5	1.0000

Compare expression of checked genes

Lus10021543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.