Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20475 537 / 0 ATMSH5 MUTS-homologue 5 (.1) AT4G25540 85 / 3e-17 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G02070 83 / 1e-16 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G24495 79 / 4e-15 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT3G18524 71 / 8e-13 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G17380 64 / 1e-10 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G24320 44 / 0.0004 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010010 [exp] 82 / 3e-16 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10005743 [exp] 76 / 4e-14 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10025030 [exp] 74 / 2e-13 AT4G02070 350 / 7e-104 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10042967 [exp] 72 / 4e-13 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10032469 [exp] 72 / 5e-13 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10027452 [exp] 71 / 6e-13 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10017724 [exp] 69 / 4e-12 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10028966 [exp] 59 / 7e-09 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10033095 [exp] 54 / 3e-07 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089500 [exp] 554 / 0 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.014G121701 [exp] 88 / 4e-18 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.006G159200 [exp] 78 / 6e-15 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G156314 [exp] 78 / 6e-15 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.012G060000 [exp] 78 / 7e-15 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.015G142900 [exp] 74 / 1e-13 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.001G156200 [exp] 59 / 7e-09 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V CL0023 [flax] [poplar] PF05192 [flax] [poplar] MutS_III MutS domain III
Representative CDS sequence Show only first row Show all	>Lus10021544 pacid=23159105 polypeptide=Lus10021544 locus=Lus10021544.g ID=Lus10021544.BGIv1.0 annot-version=v1.0 ATGCTCACCTCTTATTTCCCCGTGCAATTTTTTAAGGTGACTGGAGTTATTGATGTTAACAGAAGCAAAGGAAAAGGTTATGGGACAATGGTAAAAGAAG GATTCTGTGATGAGCTGGATGAGCTGAGACAAATCTATGAGGAACTCCCAGAATTTCTCCAACAGGTTTCAGCAGTAGAAGTTGCACAGCTTCCTCATTT TGCTCGAGGGGATCTTCTTCCTTCTATAGTGTACATACAACAAATAGGGTATTTGTTATGCATTTTTAATGAAAAACCTGATGATACCTCACTCGAGAAG CTTCATGATTGCGAATTCGTGTTTTCTGATGCTGATGGAGAGACTAAAAGATTCTTTTATCGCACGTCAAAGACTCGAGAATTGGATGAACTTCTGGGAG ACATTTATCATAAGATTCTAGACATGGAGAGAGCAATTACAAGAGATCTGGTCTCACACATACTTCAATTTTCTGCACATCTGCTGAAGGCTACCAATTT TATTGCTGAGCTTGATTGTATTTTGTCGTTAGCTCTTGTTGCTCGTCAGAACAACTATGTCAGACCTGTTTTAACAGAGGAAACCTTAATCGATATACAA AATGGAAGTTTTGTTCCTGCAGATGCTGCCACAGTCGGGTTGACTGACAGGATATTCTGTGCAATGGGAAGCAAGCTTATGACTGCAGAGCAGTCAACAT TTATGATAGATCTTCATCAGGTTGGAATGATGCTAAGGCAGGCAACCTTTCGATCGTTGTGTTTGTTGGATGAATTTGGAAAAGGGACCCTTACAGAAGA TGGCGTTGGTCTACTTGGTGGCACCATATGCCATTTCATTGCTTCTGAGGACCCTCCAAAGGTTCTGTTGTGCACCCACTTGACCGAGTTATTCAACCCG AGTTGCTTACCAGAGTCAGAGAAGGTAAAGTTTCACACTATGAGCGTGTTGAGGCCTGATGACAACTCAATGGGTGCTGAGGACATTGTATTCTTGTACA GGCTAGTTCCAGGACATGCACATCTTAGTTACGGATTACACTGTGCGCTACTAGCTGGTACGTTAAGAATTAAAGACTTCTCGATGGAGCGTGGAACCCT GGACAGAGTTGAAGGATATCTCCTAGGACATTGTGAAATGAATATTTTTTTACACACGACAGCTCGCTCCATTCTTGTAGGTGTTCCTGAAGAGATTATA AAGAGGGCAGCAGTTGTATTGGATTCTAGCATAGAGAACGCCTCCATGAAGCGATTGTCCAGTGATAGTATTTCATCCCAAGATCAACTATACAATATCA AAGGTAGCCTCGCATCTTATGGGCTTCTACAACCATTCAACAGGTTAATTCAACTTTGTAAAGCTAAGCTGTGGATATTATACTTCTTGAAGCTGAACCC GTTCGTCTCTCCTCAATCGGCGAACCAAGAAATTGGAGCTTCTTCTTCTTGTTATATGGAAACAGAAGACGAAGCTTAA
AA sequence Show only first row Show all	>Lus10021544 pacid=23159105 polypeptide=Lus10021544 locus=Lus10021544.g ID=Lus10021544.BGIv1.0 annot-version=v1.0 MLTSYFPVQFFKVTGVIDVNRSKGKGYGTMVKEGFCDELDELRQIYEELPEFLQQVSAVEVAQLPHFARGDLLPSIVYIQQIGYLLCIFNEKPDDTSLEK LHDCEFVFSDADGETKRFFYRTSKTRELDELLGDIYHKILDMERAITRDLVSHILQFSAHLLKATNFIAELDCILSLALVARQNNYVRPVLTEETLIDIQ NGSFVPADAATVGLTDRIFCAMGSKLMTAEQSTFMIDLHQVGMMLRQATFRSLCLLDEFGKGTLTEDGVGLLGGTICHFIASEDPPKVLLCTHLTELFNP SCLPESEKVKFHTMSVLRPDDNSMGAEDIVFLYRLVPGHAHLSYGLHCALLAGTLRIKDFSMERGTLDRVEGYLLGHCEMNIFLHTTARSILVGVPEEII KRAAVVLDSSIENASMKRLSSDSISSQDQLYNIKGSLASYGLLQPFNRLIQLCKAKLWILYFLKLNPFVSPQSANQEIGASSSCYMETEDEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021544 [exp]	0	1
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10014067 [exp]	1.7	0.8996
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10019849 [exp]	2.8	0.8855
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	4.6	0.9131
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10042143 [exp]	5.0	0.8604
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	6.5	0.8914
AT5G02170			Transmembrane amino acid trans...		Lus10010855 [exp]	6.6	0.8786
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004551 [exp]	6.6	0.9067
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	7.5	0.8931
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	13.0	0.8869
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10014295 [exp]	13.9	0.8419

Compare expression of checked genes

Lus10021544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.