Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20475 493 / 8e-170 ATMSH5 MUTS-homologue 5 (.1) AT3G18524 62 / 2e-10 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G02070 56 / 2e-08 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G24495 56 / 2e-08 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G17380 46 / 3e-05 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT4G25540 42 / 0.0004 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042967 [exp] 71 / 3e-13 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10032469 [exp] 69 / 2e-12 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10010010 [exp] 48 / 1e-05 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10007489 [exp] 47 / 2e-05 AT4G17380 1205 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10017724 [exp] 46 / 4e-05 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10025030 [exp] 45 / 5e-05 AT4G02070 350 / 7e-104 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10033095 [exp] 42 / 0.0008 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089500 [exp] 529 / 0 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.012G060000 [exp] 69 / 2e-12 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.014G121701 [exp] 58 / 7e-09 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.006G159200 [exp] 56 / 3e-08 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G156314 [exp] 56 / 3e-08 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.014G121601 [exp] 55 / 5e-08 AT4G02070 563 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.015G142900 [exp] 43 / 0.0004 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05192 [flax] [poplar] MutS_III MutS domain III
Representative CDS sequence Show only first row Show all	>Lus10021545 pacid=23159095 polypeptide=Lus10021545 locus=Lus10021545.g ID=Lus10021545.BGIv1.0 annot-version=v1.0 ATGGCATGCGTTGCGCAAGGACATCGGGTTGGCGTTTCTTACTATGATGCCAGCATTCGTCAACTATACGTCCTTGAAGTTTGGGAAGACGGCAGCTCTA ATTTTCCCATAATTGATCTAGTGAAGTATCAGGCTAGGCCCCTCGTCATTTATGCAAGCACCAAAAGCGAAGAAACATTCTTATCAGCCCTTCGTCAAAG TGATGACACAACAGAGCCCCCCACACTGAAATTGATGAAGAGTTCTATATTCAGTTATGAACAGGCATGGCACAGATTGATATACCTTAGAGTAACTGGA ATGGATGATGGGTTAAGCATCAAGGAGAGGATCTGTTATCTCAGTTCCATGATGGATATGAAAAGTGATGTCCAAGTCCGTGCTAGTGGAGGTCTTCTTG CAATATTAGAGAGTGAGATGATTGTGGATACCCTTGAGAACCAAGAGTCTGGGAGTGCATCAATTACTATTGATTCTGTGATAGAAGTATCATTAAACAA ATTTCTTAAGGTTGACGCAGCTGCACATGAGGCTCTGCAGATTTTCCAGGTAGACAAACATCCTAGTCATATGGGGATTGGTAGAGCAAAAGAAGGGTTT TCAGTATTTGGCATGATGAATAAGTGTCTAACACCAGTTGGTCGACGTCTTTTAAGAAATTGGTTTCTGCGGCCCATACTAGATTTGGAAATGTTAGACT ATCGTCTCAATGCTATATCGTTTTTCCTGAGTTCTGAAGAACTGATGACTTCTTTGCGTGAAACATTGAAGTCAATCAAGGACATTCCTTACATTTTGAA GAGCATCAGTTCACTCCTGCACGTGGAGAAGATATTTGAAACAGGCATTTCTGGAAACCTACAAGAGCATGCAAAGTACCTAAATTTTGATGTCATAGAG CAGGCTTCATCATGCATCACCACAGAGCTGGCTTATGTCTACGAATTGGTTAGTTTCTGGGCGATCTGGTGTTATGATAATAAGTTTAGGCAAAAGTTAT GGTTTAGGCAAAAGTTATGA
AA sequence Show only first row Show all	>Lus10021545 pacid=23159095 polypeptide=Lus10021545 locus=Lus10021545.g ID=Lus10021545.BGIv1.0 annot-version=v1.0 MACVAQGHRVGVSYYDASIRQLYVLEVWEDGSSNFPIIDLVKYQARPLVIYASTKSEETFLSALRQSDDTTEPPTLKLMKSSIFSYEQAWHRLIYLRVTG MDDGLSIKERICYLSSMMDMKSDVQVRASGGLLAILESEMIVDTLENQESGSASITIDSVIEVSLNKFLKVDAAAHEALQIFQVDKHPSHMGIGRAKEGF SVFGMMNKCLTPVGRRLLRNWFLRPILDLEMLDYRLNAISFFLSSEELMTSLRETLKSIKDIPYILKSISSLLHVEKIFETGISGNLQEHAKYLNFDVIE QASSCITTELAYVYELVSFWAIWCYDNKFRQKLWFRQKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021545 [exp]	0	1
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10005098 [exp]	2.0	0.8893
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10006590 [exp]	2.0	0.8962
AT5G10200			ARM-repeat/Tetratricopeptide r...		Lus10029573 [exp]	2.6	0.8775
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025094 [exp]	3.2	0.8731
AT5G58410			HEAT/U-box domain-containing p...		Lus10026420 [exp]	4.4	0.9004
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	4.9	0.8941
AT1G27320		AHK3	histidine kinase 3 (.1)		Lus10015773 [exp]	9.8	0.8316
AT1G16560			Per1-like family protein (.1.2...		Lus10038885 [exp]	12.0	0.8592
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10015341 [exp]	13.4	0.8736
AT5G49820		RUS6, EMB1879	ROOT UV-B SENSITIVE 6, Protein...		Lus10038136 [exp]	15.5	0.8442

Compare expression of checked genes

Lus10021545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.