Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55060 171 / 3e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040061 [exp] 328 / 3e-107 AT5G55060 753 / 0.0 unknown protein Lus10043118 [exp] 244 / 4e-76 AT5G55060 630 / 0.0 unknown protein Lus10032631 [exp] 237 / 2e-73 AT5G55060 643 / 0.0 unknown protein Lus10000118 [exp] 90 / 1e-20 AT5G55060 319 / 1e-106 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089300 [exp] 201 / 4e-59 AT5G55060 770 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021546 pacid=23159103 polypeptide=Lus10021546 locus=Lus10021546.g ID=Lus10021546.BGIv1.0 annot-version=v1.0 ATGGCGCTTGGATTTTATGATGAGAATTTGTACGTACTGAACATGAAAAATGATGCTGAGACCAAGGTGGGACACTTCGATCCTAGTGCAGGCAAGAAGT ACAAGTCAATAAAAGATTTTGTGGCATCTTCTGGAAGTTCTTCACCAATCAGAGAGAGAGCAAGCTTAAGTCTTGCTGCTATGAAGTCCCTGGTGCCTCG TGACAAGGATGATAAGCTCACATCCGAGTTTGAGAACAGTGAGAAGATATTCGCAGAGGCAGACTTCCTCAGGAGGAACCTTGGCTGTAGCGCAGAGTCA TTATCATTTGTCAGAGACATTCATGGTGCACCTCCTGAAAGCTTCCTCGTAAAGCTATCTGAAGTAATTGGAAGCTTTAAAACATTGCGTAATATGGCTA TCTTGTGGTGCAAAGCTGTTGCTGAACGCAATGCGCTTGCTTCTGAATCACTGGAGGCTGTATTGAAGAACGCCAGTACATTTGAAGATTCTGCTGTGGG CGCAAATTCTCCTGGCCATTTATTATATGCCAAAACAAGCAGTGGAGAACTTGTTCTTCGGCTTGGTGCCTATTCTAAGGCTCCTAATCTGTTCATGCTG GAAACTGGTGAAGTGTATGAAACAATGGAGGTGATGCTACTGAATCCTGAAGAAGTTGTGAAGGCGATGAAGCAGGCTGATGATGCAAACACCCCTGGAT CCGCAAGCAAGCATAGTAGCTTCCTAAAACTGGGCTTGAACTTTGGCATCAAAGACAGGAACCAGAAAAGAGCATCTCCAAGATGCGAAAATAGTTCGGA AGAAACTCCCGTGAAGCAGCCCTTCTCTAATTTCTTTGAGGGGAAGTCTTCCTTGTTCTCCAAGAACAAACCTCCGAAGCCAGGTGGGGCTTCGTCTCCT GGCGACAAAACCCCTTCAGCCGATGAGAATGATTGGACACTGATTTGA
AA sequence Show only first row Show all	>Lus10021546 pacid=23159103 polypeptide=Lus10021546 locus=Lus10021546.g ID=Lus10021546.BGIv1.0 annot-version=v1.0 MALGFYDENLYVLNMKNDAETKVGHFDPSAGKKYKSIKDFVASSGSSSPIRERASLSLAAMKSLVPRDKDDKLTSEFENSEKIFAEADFLRRNLGCSAES LSFVRDIHGAPPESFLVKLSEVIGSFKTLRNMAILWCKAVAERNALASESLEAVLKNASTFEDSAVGANSPGHLLYAKTSSGELVLRLGAYSKAPNLFML ETGEVYETMEVMLLNPEEVVKAMKQADDANTPGSASKHSSFLKLGLNFGIKDRNQKRASPRCENSSEETPVKQPFSNFFEGKSSLFSKNKPPKPGGASSP GDKTPSADENDWTLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55060			unknown protein		Lus10021546 [exp]	0	1
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	2.6	0.9392
AT1G55680			Transducin/WD40 repeat-like su...		Lus10037252 [exp]	3.5	0.9213
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	3.7	0.9355
AT4G30310			FGGY family of carbohydrate ki...		Lus10006975 [exp]	4.2	0.9006
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	4.6	0.9249
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10029817 [exp]	5.5	0.8967
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10037621 [exp]	7.7	0.9204
AT5G49960			unknown protein		Lus10041011 [exp]	8.7	0.8762
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	8.7	0.8868
AT4G15475			F-box/RNI-like superfamily pro...		Lus10012764 [exp]	8.8	0.8865

Compare expression of checked genes

Lus10021546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.