Plant FIBer expression Database

Lus10021547 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037742
[exp]
45 / 3e-05 AT3G06670 1112 / 0.0 binding (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G068600
[exp]
58 / 1e-10 ND /
PFAM info
Representative CDS sequence
>Lus10021547 pacid=23159110 polypeptide=Lus10021547 locus=Lus10021547.g ID=Lus10021547.BGIv1.0 annot-version=v1.0
ATGAATGTTGGTAGTGTGTTGGACCTAAGGAAAAGAGGTGATGAGCGAGCTCTGGAGAAAGAAGAGGAAGATTACTTCAATGAAGACAGCGAGGAAGAGG
TTCATCATTTGGGAATAAAATGCTTCGTTCATCAACAAAAGGTACTAGCTAAAGTTATAATTTTGCTGCATAGAATGGAAGAAACTGAGTATCTAGCTAC
CTATCATCCCTTCATCTTCCTCCAAAGTTTCAGCTTGTTTCCGTGGGGGCGGTTTGTAATCAGCATCATCCTCGTCGTCATTGTAGTCTGCAAGTCCACC
ACTGCTAGAGCAGCCCCAGGTTACAAGGCCTTGTTTTCCCCAAACTCAACCATGAACTGTCTCGCCCAGTTTCAGTCTCCATTCCCTCCCCTTCCGGTCC
CTTCATCACTCCTTAAACACAACAATCAGCCATGGCGATTAGCGAACCAGACGCTACTCCGGCAGCAACCGAGAAAATGCAGTGGCCGGAAACTTGGAAA
CACTACGAGGACAAAATCAGCCATCGTCGACTCCCTTGTTCTTGGAGTTGCCACCGCCAAACGTGGGGACATTTCTGTACTGTTGCCAACCGGAGCTGTG
ATGCTCTTCTTCTACGTCATAGCCAACTTCGTGTTCCCCAGTTTCTTAATGAAGTACTATGAGTCCGAAGCAGCCGATGAGGAGGACAACGATAAAGACT
GA
AA sequence
>Lus10021547 pacid=23159110 polypeptide=Lus10021547 locus=Lus10021547.g ID=Lus10021547.BGIv1.0 annot-version=v1.0
MNVGSVLDLRKRGDERALEKEEEDYFNEDSEEEVHHLGIKCFVHQQKVLAKVIILLHRMEETEYLATYHPFIFLQSFSLFPWGRFVISIILVVIVVCKST
TARAAPGYKALFSPNSTMNCLAQFQSPFPPLPVPSSLLKHNNQPWRLANQTLLRQQPRKCSGRKLGNTTRTKSAIVDSLVLGVATAKRGDISVLLPTGAV
MLFFYVIANFVFPSFLMKYYESEAADEEDNDKD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G06670 binding (.1.2) Lus10021547
[exp]
0 1
AT5G19220 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE ... Lus10034053
[exp]
1.4 0.9611
AT5G30510 ARRPS1, RPS1 ribosomal protein S1 (.1) Lus10017100
[exp]
2.4 0.9615
AT3G01550 ATPPT2 phosphoenolpyruvate (pep)/phos... Lus10013083
[exp]
3.3 0.9466
AT1G07080 Thioredoxin superfamily protei... Lus10012503
[exp]
3.5 0.9545
AT5G39210 CRR7 chlororespiratory reduction 7 ... Lus10015380
[exp]
3.9 0.9539
AT1G45474 LHCA5 photosystem I light harvesting... Lus10042657
[exp]
4.6 0.9496
AT4G21445 unknown protein Lus10002594
[exp]
5.5 0.9560
AT4G20760 NAD(P)-binding Rossmann-fold s... Lus10038343
[exp]
6.0 0.9484
AT2G21280 GC1, ATSULA GIANT CHLOROPLAST 1, NAD(P)-bi... Lus10042051
[exp]
6.2 0.9270
AT1G75690 LQY1 LOW QUANTUM YIELD OF PHOTOSYST... Lus10002040
[exp]
8.8 0.9447

Lus10021547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.