Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26890 312 / 1e-101 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT5G55090 305 / 7e-99 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT2G32510 265 / 2e-84 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT1G05100 258 / 7e-82 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT3G50310 186 / 2e-54 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT4G36950 186 / 3e-54 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT1G07150 183 / 9e-52 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT5G67080 177 / 7e-51 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT1G54960 178 / 4e-49 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 177 / 2e-48 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022951 [exp] 636 / 0 AT4G26890 325 / 3e-107 mitogen-activated protein kinase kinase kinase 16 (.1) Lus10030042 [exp] 258 / 8e-81 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10035284 [exp] 255 / 9e-80 AT2G32510 319 / 9e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10031544 [exp] 232 / 1e-69 AT1G05100 298 / 3e-97 mitogen-activated protein kinase kinase kinase 18 (.1) Lus10012668 [exp] 176 / 2e-50 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10010519 [exp] 177 / 3e-48 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10034060 [exp] 177 / 3e-48 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10015185 [exp] 174 / 2e-47 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10031506 [exp] 168 / 5e-45 AT1G09000 659 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G007400 [exp] 294 / 6e-94 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.014G155000 [exp] 280 / 3e-90 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1) Potri.002G228200 [exp] 281 / 7e-90 AT2G32510 321 / 2e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Potri.004G007700 [exp] 282 / 9e-90 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.003G130000 [exp] 197 / 2e-58 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.005G139300 [exp] 197 / 2e-58 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.001G278600 [exp] 194 / 3e-56 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.007G044800 [exp] 191 / 4e-56 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 189 / 3e-55 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.009G073200 [exp] 192 / 7e-55 AT1G07150 360 / 9e-120 mitogen-activated protein kinase kinase kinase 13 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021551 pacid=23159094 polypeptide=Lus10021551 locus=Lus10021551.g ID=Lus10021551.BGIv1.0 annot-version=v1.0 ATGTTCCAAACTGAGTGGTCTCGAGGACGTGTAATCGGCCGTGGTTCCACCGCCACCGTCTCTCTCGCTACCTCCCTCGCCTCCGGTGAGATCTTTGCTT TGAAATCCTCCAACCTTCCATTGCAGAGAGAGCAATCCATTCTCTCCAATCTCAGCTCTCCCTACATTGTCAAGTACATAGGCTCCGCTGATTTCTCCTC TGCCGACGACACTCCTATGTACAATCTCTGTATGGAATACGCCGCCGGCGGAAATCTGACGGACCTGATTCGGCGGCGGGGCGGCCGGCTCTGTGAGGCA GAGATCGGGACCACAGTGCTCCGGATTCTGCTCGGATTGGAGTACTTGCACGCCCGAGGATTAGCGCATTGCGACATCAAGGCTCAGAACATACTCGTAG ACAAGCACGACGTGCCCATAATAGGGGATTTCGGGTGTGCAAAGTTCGTAGGCGGCGGTGGTGACAACGGTGTGTTTTCAGGTACGCCGGCGTTTATGGC GCCAGAGGTGGCTCGCGGAGAGGAGCAAGGGTTTGCGGCGGATGTTTGGGCGGTTGGGTGTACGGTGATTGAGATGGCGAGTGGGAGGATTCCGTGGGCG GAATTCGGGGACAACAACCCTGTTTCTGCTATCTACCGAATCGGGTTTACCGATGCGTCACCGGCGGTGCCCAGCTGGTTATCGGAGGAAGCCAAGAATT TTGTGTCCAAGTGTTTGATTAAAGAAGAGAGAGAACGGTGGAGTGTTAAAGAGCTGTTAGATCACCCTTTCCTCGATGAATCTAAAGAGCCAATTGAGTT GAAGGAGCTGGTTACTACAAGTAGTAGCTCCCCAATCTGCGTACTGGATCATGGGTTTTGGGAATCCCTGGAAGGAATTGATAGTCGGAAAAATATGACG ACCCAAGAAATCTGTTTCTCAAAAATTCAAGCTGCTGATAGGATCAAGAGCCTGATTAGTGGGTTTCCATCGAATTTGCCTCACTGGAGTATTGACGATG GTTGGTTTACAGTAAGAGGAGGTAGCGATGACAGCGAGAAGACAGAGGTGGAGGAACAGCAGTCCGAGGAAAACGATGGCGTTTTCTTTGGGAGCAGTGA ATTCTATGGACCACTAGAAGATGCACCTCTGTTTTTGGAATATTCACCAAAATTAAATTTCGATGAATTAGAAATAGAATTAGACTACTCCAATATTGTA ATTGTTATTGTTATTAATAGTAGTAGTAGAAGAGATGGTTTTGTAGTTGGGAGAGAATTCGACGATGACATTAATAATACTGGTGACAATTCTTCTTTGC AAAAATCTTTTGTTTGGGCTGCAATTGTGTTCTTATTTGAATATAGCTCAAATAACAGCTATCCTTATGGGAAACAAATTATGAACATCACATGTAGGAC TCAAACTCAAATACCCCATATTATTGCTCCCACCATTTGGAAGGTTATAATTTTGATAAGAATTGCACCTACCGCTTGGTATGGTTTAAACTTTAAAACA TCAAAAATTGATTAG
AA sequence Show only first row Show all	>Lus10021551 pacid=23159094 polypeptide=Lus10021551 locus=Lus10021551.g ID=Lus10021551.BGIv1.0 annot-version=v1.0 MFQTEWSRGRVIGRGSTATVSLATSLASGEIFALKSSNLPLQREQSILSNLSSPYIVKYIGSADFSSADDTPMYNLCMEYAAGGNLTDLIRRRGGRLCEA EIGTTVLRILLGLEYLHARGLAHCDIKAQNILVDKHDVPIIGDFGCAKFVGGGGDNGVFSGTPAFMAPEVARGEEQGFAADVWAVGCTVIEMASGRIPWA EFGDNNPVSAIYRIGFTDASPAVPSWLSEEAKNFVSKCLIKEERERWSVKELLDHPFLDESKEPIELKELVTTSSSSPICVLDHGFWESLEGIDSRKNMT TQEICFSKIQAADRIKSLISGFPSNLPHWSIDDGWFTVRGGSDDSEKTEVEEQQSEENDGVFFGSSEFYGPLEDAPLFLEYSPKLNFDELEIELDYSNIV IVIVINSSSRRDGFVVGREFDDDINNTGDNSSLQKSFVWAAIVFLFEYSSNNSYPYGKQIMNITCRTQTQIPHIIAPTIWKVIILIRIAPTAWYGLNFKT SKID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Lus10021551 [exp]	0	1
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10035284 [exp]	2.0	0.8384
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10003738 [exp]	2.4	0.8298
AT3G48660			Protein of unknown function (D...		Lus10015769 [exp]	4.9	0.8101
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10021951 [exp]	6.0	0.7643
AT1G75810			unknown protein		Lus10033134 [exp]	6.5	0.8181
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	9.2	0.8043
					Lus10036759 [exp]	9.4	0.7888
AT5G17280			unknown protein		Lus10028356 [exp]	10.1	0.8045
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Lus10030068 [exp]	23.3	0.7658
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	24.9	0.8063

Compare expression of checked genes

Lus10021551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.