Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11910 777 / 0 ATAPA1, APA1 aspartic proteinase A1 (.1) AT1G62290 756 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G04460 681 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G22050 199 / 1e-58 Eukaryotic aspartyl protease family protein (.1) AT1G69100 175 / 2e-49 Eukaryotic aspartyl protease family protein (.1) AT5G43100 60 / 2e-09 Eukaryotic aspartyl protease family protein (.1) AT3G50050 59 / 6e-09 Eukaryotic aspartyl protease family protein (.1) AT1G08210 47 / 2e-05 Eukaryotic aspartyl protease family protein (.1) AT2G36670 47 / 3e-05 Eukaryotic aspartyl protease family protein (.1.2) AT5G10080 46 / 6e-05 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022957 [exp] 1009 / 0 AT1G11910 791 / 0.0 aspartic proteinase A1 (.1) Lus10032636 [exp] 878 / 0 AT1G11910 735 / 0.0 aspartic proteinase A1 (.1) Lus10020024 [exp] 748 / 0 AT1G11910 762 / 0.0 aspartic proteinase A1 (.1) Lus10043112 [exp] 726 / 0 AT1G11910 639 / 0.0 aspartic proteinase A1 (.1) Lus10015547 [exp] 726 / 0 AT1G11910 742 / 0.0 aspartic proteinase A1 (.1) Lus10035285 [exp] 595 / 0 AT1G11910 619 / 0.0 aspartic proteinase A1 (.1) Lus10030041 [exp] 525 / 0 AT1G11910 535 / 0.0 aspartic proteinase A1 (.1) Lus10019309 [exp] 64 / 3e-10 AT5G43100 712 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024792 [exp] 59 / 1e-08 AT5G43100 839 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356900 [exp] 824 / 0 AT1G11910 800 / 0.0 aspartic proteinase A1 (.1) Potri.011G007600 [exp] 782 / 0 AT1G11910 721 / 0.0 aspartic proteinase A1 (.1) Potri.004G007600 [exp] 769 / 0 AT1G11910 779 / 0.0 aspartic proteinase A1 (.1) Potri.013G002200 [exp] 663 / 0 AT1G11910 622 / 0.0 aspartic proteinase A1 (.1) Potri.002G228300 [exp] 614 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.005G002800 [exp] 599 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.010G003400 [exp] 544 / 0 AT1G62290 548 / 0.0 Saposin-like aspartyl protease family protein (.1.2) Potri.005G144600 [exp] 63 / 4e-10 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 56 / 6e-08 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G092100 [exp] 55 / 1e-07 AT5G10080 474 / 3e-163 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease CL0129 [flax] [poplar] PF03489 [flax] [poplar] SapB_2 Saposin-like type B, region 2 CL0129 [flax] [poplar] PF05184 [flax] [poplar] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Lus10021552 pacid=23159082 polypeptide=Lus10021552 locus=Lus10021552.g ID=Lus10021552.BGIv1.0 annot-version=v1.0 ATGGCTTCTTTCCGCGCAGTTGTGAGCATGGGAACGTTCAGACCTGTCACAACTGCTCTTTTGCTTTGCCTGTTGCTGCCTTTGGTTTTCGCTGCATCAA ATGATGGCCTGCTCAGAATTGGAATTCGGAAGATCAAGTTTGATCAGAACAACCGGGTTTCTGCTGAGCTGGGTTCTAAGGAAGGAGAGTTGTTGAATGC TTCTATCAGAAAGTATGGTTTCCGTGAGAAGCTGGGTGGTGCTGCCGATACCGACATAGTGACTCTAAAGAACTATATGGATGCGCAGTACTTTGGTGAG ATTGGTGTTGGTACTCCGCCACAAACGTTTACGGTGATTTTCGACACTGGTAGTTCTAACCTATGGGTGCCCTCCTCCAAGTGCTACTTCTCGCTATCTT GCTATTTCCACTCCAGGTACAAGTCCAGTCAGTCTAGTACCTACAAGAAGAATGGGAAATCTGCTGCTATCCAGTATGGCAGTGGAGCTATTTCTGGCTT CTTCAGTGAGGATAGTGTGAAAGTCGGTGATATTGTCGTCAAGAATCAGGAATTTATAGAAGCAACAAAAGAGCCGGGCCTCACATTCTTGGTAGCCAAG TTTGATGGAATACTAGGGCTTGGGTTTCAAGAGATTTCTGTTAGAAATTCTGTCCCCGTGTGGTACAACATGGTCGAACAGGGACTCATCAACGAGCCAG TTTTCTCATTCTGGTTCAACCGCAATGCTGATGAGGAACAAGGGGGTGAACTTGTTTTTGGAGGTGTGGATCCTAACCACTTTGTCGGTGAGCACACTTA TGTCCCCGTGACACAGAAAGGGTATTGGCAGTTTGACATGGGCGATGTACTGGTTGCTGGAAGATCCACTGGCTTCTGTTCTGGTGGCTGTGCGGCCATT GCCGACTCTGGAACCTCTTTGTTGGCTGGACCAACAGCAATTATTACAGAAGTTAATCATGCAATTGGTGCTACTGGGATAGTGAGCCAAGAATGCAAGT CCGTAGTTTCTCAGTATGGAGAAAGCATAATTCAGATGCTTTTAGCTAAGAATGAACCTCAAAAGATATGCTCTCAGATAAATTTATGTGAATTTGATGG GTCCAGAGGTGTCAGTATGGGCATTGAGAGTGTTGTGAGTGAGAATATTGAGAAAGCAGTCCACGCCACTAGTGAGGCCACTTGCGCTGCTTGTGAGATG GCAGTTGTCTGGATGCAGACTCAGCTTAAGCAGAATGAAACACAGGAGCGCATTCTTGACTATGTAAACAATCTCTGTGAGCGACTGCCCAGTCCAATGG GAGAATCAACTGTTGATTGTGGCAGCTTGTCTACCCTGCCCACTGTCTCCTTCACAATTGGGGGAAAAGTTTTCGACCTTACTCCTGAACAATATGTTCT CAAAGTTGGCGAGGGGCCTGCAGCTCAATGTCTTAGCGGATTCACAGCTATTGATGTGGCACCGCCACGTGGTCCTCTCTGGATCCTGGGCGACGTGTTC ATGGGCCGCTATCACACTGTGTTTGACTATGGCAACCTTAGGATTGGATTTGCCGAAGCCGCATATGACGCTCTGGCCGTGGGTGCACTCTGGTTGGGCG AGTACTGGTTCGATTTTCTGGCGAGATCACCTTCTGATTTAGCAGCTCCGCGTCTGTCGTAG
AA sequence Show only first row Show all	>Lus10021552 pacid=23159082 polypeptide=Lus10021552 locus=Lus10021552.g ID=Lus10021552.BGIv1.0 annot-version=v1.0 MASFRAVVSMGTFRPVTTALLLCLLLPLVFAASNDGLLRIGIRKIKFDQNNRVSAELGSKEGELLNASIRKYGFREKLGGAADTDIVTLKNYMDAQYFGE IGVGTPPQTFTVIFDTGSSNLWVPSSKCYFSLSCYFHSRYKSSQSSTYKKNGKSAAIQYGSGAISGFFSEDSVKVGDIVVKNQEFIEATKEPGLTFLVAK FDGILGLGFQEISVRNSVPVWYNMVEQGLINEPVFSFWFNRNADEEQGGELVFGGVDPNHFVGEHTYVPVTQKGYWQFDMGDVLVAGRSTGFCSGGCAAI ADSGTSLLAGPTAIITEVNHAIGATGIVSQECKSVVSQYGESIIQMLLAKNEPQKICSQINLCEFDGSRGVSMGIESVVSENIEKAVHATSEATCAACEM AVVWMQTQLKQNETQERILDYVNNLCERLPSPMGESTVDCGSLSTLPTVSFTIGGKVFDLTPEQYVLKVGEGPAAQCLSGFTAIDVAPPRGPLWILGDVF MGRYHTVFDYGNLRIGFAEAAYDALAVGALWLGEYWFDFLARSPSDLAAPRLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10021552 [exp]	0	1
AT3G10210			SEC14 cytosolic factor family ...		Lus10035431 [exp]	1.4	0.9241
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10022957 [exp]	1.4	0.9554
AT4G01000			Ubiquitin-like superfamily pro...		Lus10012629 [exp]	6.0	0.8766
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020322 [exp]	6.9	0.9080
AT1G55265			Protein of unknown function, D...		Lus10039182 [exp]	9.2	0.8648
AT1G30540			Actin-like ATPase superfamily ...		Lus10038542 [exp]	10.0	0.8751
AT3G14830			unknown protein		Lus10005552 [exp]	10.2	0.8955
AT2G05910			Protein of unknown function (D...		Lus10033433 [exp]	11.6	0.8792
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10015237 [exp]	12.4	0.8925
AT1G70160			unknown protein		Lus10029209 [exp]	12.7	0.8979

Compare expression of checked genes

Lus10021552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.