Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25290 152 / 3e-44 Auxin-responsive family protein (.1.2) AT5G35735 144 / 5e-41 Auxin-responsive family protein (.1) AT4G12980 142 / 2e-40 Auxin-responsive family protein (.1) AT4G17280 142 / 4e-40 Auxin-responsive family protein (.1) AT5G47530 140 / 2e-39 Auxin-responsive family protein (.1) AT2G04850 117 / 5e-31 Auxin-responsive family protein (.1) AT3G59070 100 / 2e-24 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07570 99 / 3e-24 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G61750 97 / 2e-23 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G54830 55 / 1e-08 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000915 [exp] 206 / 4e-64 AT3G25290 205 / 2e-61 Auxin-responsive family protein (.1.2) Lus10025877 [exp] 143 / 3e-41 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10002274 [exp] 143 / 1e-40 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10017564 [exp] 143 / 2e-40 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10006398 [exp] 140 / 2e-40 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10001734 [exp] 142 / 3e-40 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10038225 [exp] 136 / 1e-39 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10012350 [exp] 140 / 2e-39 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10010498 [exp] 139 / 5e-39 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024700 [exp] 184 / 4e-56 AT5G47530 199 / 7e-60 Auxin-responsive family protein (.1) Potri.004G006700 [exp] 146 / 2e-43 AT5G35735 156 / 2e-45 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 146 / 1e-41 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 145 / 2e-41 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.010G156600 [exp] 144 / 8e-41 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 143 / 9e-41 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 142 / 2e-40 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 139 / 4e-39 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 137 / 2e-38 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.002G222600 [exp] 125 / 6e-34 AT2G04850 545 / 0.0 Auxin-responsive family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021553 pacid=23159114 polypeptide=Lus10021553 locus=Lus10021553.g ID=Lus10021553.BGIv1.0 annot-version=v1.0 ATGGCGATTGCAAAAGGTCAAACTATAAGTGACGGTGACATGGGTTCTCATGTGCACGGGATAATGAACATAATTGGATGGGGTGTACTGCTACCAGGCG GGGCGATAATGGTAAGATACCTGAGGTATCCATACCAGGTACAGGAATCCTTCTGGTTTTACGCACACCTCACTTGCCAACTTGCTGGATATAGCCTTGG CACCGCTGGCTGGATACTTGGGTTGTACCTTGGAAAGGCCTCTACTCGTTATTCCTTCAGAACCCATCGTCTATACTCAATCTTCATCTTCACCTTTGCC ACTTTACAAGTATTGGCAGTAAAGTTGAGACCAAGATCCACGGACGAGTACAAAAGGTACTGGAACATGTACCACCATTTCTTAGGATATGCGCTGCTAT CTGTGATCGTCATTAACATATTCCAGGGAATTGGGATTCTGAGACCAGACTATACTTGGAAGTGGACTTACATTAGCATCCTCGTAGCTTTAGCCATAAT CGTCCTAAGCCTTGAAACTTACACTTGGATCAAATTCTACAGACCTCACCCGCCCAATCATGTCCACCACAACAACAATAACAACCACAGCAACAGTGCG CGGCCTTCTGGAAATGAGTCCTGCCCAAAATTAGAATATGGTTCGATAGGCCCTTCCCCAAGTTCGACTGCCTCGCCACCAAGTCTGTCGTCCATGTAG
AA sequence Show only first row Show all	>Lus10021553 pacid=23159114 polypeptide=Lus10021553 locus=Lus10021553.g ID=Lus10021553.BGIv1.0 annot-version=v1.0 MAIAKGQTISDGDMGSHVHGIMNIIGWGVLLPGGAIMVRYLRYPYQVQESFWFYAHLTCQLAGYSLGTAGWILGLYLGKASTRYSFRTHRLYSIFIFTFA TLQVLAVKLRPRSTDEYKRYWNMYHHFLGYALLSVIVINIFQGIGILRPDYTWKWTYISILVALAIIVLSLETYTWIKFYRPHPPNHVHHNNNNNHSNSA RPSGNESCPKLEYGSIGPSPSSTASPPSLSSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	0	1
AT1G68430			unknown protein		Lus10003042 [exp]	2.0	0.9418
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10035783 [exp]	2.2	0.9307
AT1G67790			unknown protein		Lus10034566 [exp]	2.2	0.9510
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	2.4	0.9260
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10002381 [exp]	4.5	0.9155
AT3G18670			Ankyrin repeat family protein ...		Lus10027721 [exp]	4.6	0.9394
AT1G68430			unknown protein		Lus10034103 [exp]	4.6	0.9233
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10005956 [exp]	5.7	0.9225
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022305 [exp]	6.0	0.9369
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10034567 [exp]	6.0	0.9214

Compare expression of checked genes

Lus10021553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.