Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62300 186 / 5e-52 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G04450 176 / 1e-48 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT4G22070 171 / 1e-46 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT4G01720 151 / 1e-39 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT1G68150 130 / 5e-33 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT1G18860 130 / 2e-32 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT5G15130 130 / 5e-32 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT1G69810 109 / 9e-26 WRKY ATWRKY36, WRKY36 WRKY DNA-binding protein 36 (.1) AT1G80840 102 / 6e-24 WRKY ATWRKY40, WRKY40 WRKY DNA-binding protein 40 (.1) AT4G31800 99 / 1e-22 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022959 [exp] 664 / 0 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10035286 [exp] 178 / 6e-49 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1) Lus10015546 [exp] 152 / 3e-41 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10038028 [exp] 145 / 7e-38 AT4G04450 247 / 3e-76 WRKY family transcription factor (.1) Lus10023615 [exp] 130 / 8e-32 AT5G15130 244 / 1e-73 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10024246 [exp] 129 / 2e-31 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10035971 [exp] 125 / 8e-31 AT1G68150 206 / 3e-62 WRKY DNA-binding protein 9 (.1) Lus10016682 [exp] 123 / 7e-30 AT1G68150 194 / 2e-57 WRKY DNA-binding protein 9 (.1) Lus10009969 [exp] 117 / 7e-30 AT4G04450 166 / 8e-49 WRKY family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G007500 [exp] 236 / 5e-70 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.014G155100 [exp] 229 / 3e-67 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.011G007800 [exp] 187 / 4e-52 AT1G62300 391 / 1e-129 WRKY family transcription factor (.1) Potri.014G111900 [exp] 183 / 4e-51 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.002G228400 [exp] 178 / 1e-48 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1) Potri.002G186600 [exp] 166 / 7e-45 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.017G079500 [exp] 130 / 5e-32 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.001G208600 [exp] 129 / 7e-32 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.015G064100 [exp] 128 / 4e-31 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.003G182200 [exp] 112 / 3e-27 AT1G80840 293 / 1e-98 WRKY DNA-binding protein 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10021554 pacid=23159108 polypeptide=Lus10021554 locus=Lus10021554.g ID=Lus10021554.BGIv1.0 annot-version=v1.0 ATGTCTCGTACTTTCTCGCCTACTGCTAATGATCATCACCCATCTTCGATGCCAATCCCAATCAATGAAGGAAATGACGACAAAACACAACAACTTGAGG TCAATGACCGTGATCAACTAGACAACATCAACTCATCACGACTTGATGATGTGTTTTCTCCCGAAAACCCACGGATGGTTATAAGCGAGGTTAATTTTTT ATCCAACGATCTTCTTCTTCCAAAGGAACAAGATGATGTTTCCACTTTGGATGCTCTTTTAATGGCCCAAGACGCTATCAACGCTGATCTACATCCCTCG TGCCTTGTAAATTTGGCGGTATTGCAGGCTGAAATGGATCGATTGATAGCAGAGAACCAACAACTAAGAAGCAGCCTCAATCAAGTGAATTCTGACTACA ATGCCTTACAGATTCAGCTATTTGCTCTCATGCACCAGCAGCAACCCCCCAATCAACACCTCAAGTCAACCACCGATAATCAGATGAAGAGCATAGAACA CAAAAATGGAGCATCAAGTACCGGAGCAATGGTGGCTAGACAGTTCATTGAGATGGGGAAAGCACCTGAAAACAAAGGCATGAACAGTAGTAGGCTTGTT GGTCGGGAGGAGGACCCATCTCAATCAACTTCCGAGGAAGAAAGGTCAGCCGATTGCTCAATGGATTGCAAGTCCTCTTCCCCAAAGTCTACGGGGAATA CCATGCGTTTGCGGAGAAGCAGTAGAGAAGATGGTGCAGTTCAAGACAGATATGACTTGAGATCATCATCGTCCGCCGATCATCACCATAACAATAATAG TACTAGTTACCGAAATAACACTAGTACAACCGACCATAACAACAGCAACAACAGTAGTGGAAACAATATTATTCAGAAGCAGGTACAATATCAGCAGCAA CCAAGTGGATGGACGCCAAACAAGGTGCCCAAATTCGAAGCAAGTTCGTCATCATCAGCAGAAGCAGAGGAGCGCAAGGCTGAGAATACCCTTTCCATGA TCAAGAAAGCCCGAGTTTCTGTTCGAGCCCGATCTGAAGCTGCCATGATGAATGATGGGTGTCAATGGAGAAAGTACGGGCAGAAGATGGCAAAAGGGAA CCCTTGCCCACGAGCTTACTATCGGTGCACAATGGCTTCTGGTTGCCCAGTTCGGAAGCAGGTGCAAAGGTGCGCAGAGGACCAGTCAATCCTAATAACA ACCTACGAGGGACACCACAACCACCCTCTCCCACCAGCAGCAATGACTATGGCATCCACAACTTCCGCAGCAGCCTCAATGCTCCTCTCGGGTTCAATGC CTTCCGCTGACGGTCTCCCTAACACCAACCTCCTCGCCAGAAGTCTCCAGCTCTCCTCCCCACCCAGCATGGCTACCTTGTCTGCCTCTGCTCCTTTCCC CACAGTCACATTAGACCTCACTCACCCTTCCACCACATTACAACGCCACCATGCTTCAACCCAATTCCTCTCCTCTCCTAACTTCCCACAGCAACATCTC TTCGGACTGCACCCTGAAGCAAACGCCTCTTCTCAGTCCCCAGCTGACATTGTTAGTGCCGCCACAGCTGCTATAACCGCCGATCCCAACTTCACGGCAG CGCTGGTGGCCGCAGTTACTTCCATCATTGGGAATGGACATGGCACCAATAATGGGAATAGCAGTCCCAATGTCAGAACTCACATTGAGAATACTTGA
AA sequence Show only first row Show all	>Lus10021554 pacid=23159108 polypeptide=Lus10021554 locus=Lus10021554.g ID=Lus10021554.BGIv1.0 annot-version=v1.0 MSRTFSPTANDHHPSSMPIPINEGNDDKTQQLEVNDRDQLDNINSSRLDDVFSPENPRMVISEVNFLSNDLLLPKEQDDVSTLDALLMAQDAINADLHPS CLVNLAVLQAEMDRLIAENQQLRSSLNQVNSDYNALQIQLFALMHQQQPPNQHLKSTTDNQMKSIEHKNGASSTGAMVARQFIEMGKAPENKGMNSSRLV GREEDPSQSTSEEERSADCSMDCKSSSPKSTGNTMRLRRSSREDGAVQDRYDLRSSSSADHHHNNNSTSYRNNTSTTDHNNSNNSSGNNIIQKQVQYQQQ PSGWTPNKVPKFEASSSSSAEAEERKAENTLSMIKKARVSVRARSEAAMMNDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCAEDQSILIT TYEGHHNHPLPPAAMTMASTTSAAASMLLSGSMPSADGLPNTNLLARSLQLSSPPSMATLSASAPFPTVTLDLTHPSTTLQRHHASTQFLSSPNFPQQHL FGLHPEANASSQSPADIVSAATAAITADPNFTAALVAAVTSIIGNGHGTNNGNSSPNVRTHIENT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10021554 [exp]	0	1
AT5G66660			Protein of unknown function (D...		Lus10018880 [exp]	1.0	0.9175
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10021992 [exp]	2.8	0.8755
AT5G57280		RID2	root initiation defective 2, S...		Lus10015533 [exp]	3.5	0.8674
AT3G49070			Protein of unknown function (D...		Lus10018879 [exp]	4.6	0.8160
AT4G02250			Plant invertase/pectin methyle...		Lus10001464 [exp]	5.5	0.8091
AT5G51490			Plant invertase/pectin methyle...		Lus10027203 [exp]	6.0	0.8099
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016725 [exp]	7.9	0.7644
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	8.5	0.8125
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	8.9	0.8312
AT5G38200			Class I glutamine amidotransfe...		Lus10035996 [exp]	10.0	0.8432

Compare expression of checked genes

Lus10021554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.