Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45550 394 / 1e-141 MOB1-like MOB1-like, Mob1/phocein family protein (.1) AT4G19045 380 / 6e-136 Mob1/phocein family protein (.1) AT5G20440 257 / 2e-87 Mob1/phocein family protein (.1) AT5G20430 167 / 2e-53 Mob1/phocein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017172 [exp] 429 / 7e-155 AT5G45550 396 / 6e-142 MOB1-like, Mob1/phocein family protein (.1) Lus10007595 [exp] 370 / 5e-132 AT5G45550 394 / 1e-141 MOB1-like, Mob1/phocein family protein (.1) Lus10012150 [exp] 360 / 7e-128 AT5G45550 399 / 2e-143 MOB1-like, Mob1/phocein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142500 [exp] 414 / 2e-149 AT5G45550 399 / 2e-143 MOB1-like, Mob1/phocein family protein (.1) Potri.001G132700 [exp] 387 / 6e-139 AT4G19045 430 / 7e-156 Mob1/phocein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03637 [flax] [poplar] Mob1_phocein Mob1/phocein family
Representative CDS sequence Show only first row Show all	>Lus10021556 pacid=23182120 polypeptide=Lus10021556 locus=Lus10021556.g ID=Lus10021556.BGIv1.0 annot-version=v1.0 ATGATGTTCATCCCAAGGTTTGAATCAAGAGTAAACCAGAAAACGTTTCGTCCAAAGAAGAATGCTCCATCTGGAAGCAAGGGTGCTCAACTTCAAGCAC ATATTGATGCTACTTTAGGTAGTGGTAACTTGAGGGAAGCTGTAAGACTCCCTCCTGGAGAAGATATCAATGAGTGGCTAGCAGTGAACACTGTGGATTT CTTTAATCAAGTAAACATTTTGTATGGAACTTTGACTGAATTCTGTACGCCATCCAACTGTCCAACAATGACAGCTGGCCCAAAATATGAATATCGATGG GCTGATGGAGTTACCATAAAGAAGCCAATTGAGGTATCTGCTCCAAAGTATGTTGAATATCTAATGGATTGGATTGAGGCTCAATTAGATGATGAGAAGA TCTTCCCTCAAAGATTGGGGGCACCATTCCCACAGAATTTTCAAGATGTTGTGAAGACAATATTTAAGAGATTGTTCCGTGTATATGCCCACATATATCA TTCCCATTTCCAGAAGATAGTGAGTTTGAAGGAAGAAGCACATCTTAACACTTGCTTTAAACATTTCGTTCTCTTTACATGGGAATTTCGGTTGATTGAC AAGGGAGAACTCGCACCGCTCCACGATCTCGTTGAATCCATCCTTTGA
AA sequence Show only first row Show all	>Lus10021556 pacid=23182120 polypeptide=Lus10021556 locus=Lus10021556.g ID=Lus10021556.BGIv1.0 annot-version=v1.0 MMFIPRFESRVNQKTFRPKKNAPSGSKGAQLQAHIDATLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQVNILYGTLTEFCTPSNCPTMTAGPKYEYRW ADGVTIKKPIEVSAPKYVEYLMDWIEAQLDDEKIFPQRLGAPFPQNFQDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFVLFTWEFRLID KGELAPLHDLVESIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10021556 [exp]	0	1
					Lus10004148 [exp]	1.4	0.9173
AT3G27210			unknown protein		Lus10035217 [exp]	2.0	0.9008
AT3G04970			DHHC-type zinc finger family p...		Lus10004149 [exp]	2.2	0.9200
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10010655 [exp]	4.6	0.8816
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Lus10022711 [exp]	7.7	0.8451
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10040795 [exp]	9.0	0.8503
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	9.9	0.9079
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10005428 [exp]	13.0	0.8498
AT1G70780			unknown protein		Lus10031920 [exp]	13.7	0.8311
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10012034 [exp]	14.8	0.8592

Compare expression of checked genes

Lus10021556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.