Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35570 802 / 0 O-fucosyltransferase family protein (.1) AT2G37980 608 / 0 O-fucosyltransferase family protein (.1) AT3G54100 588 / 0 O-fucosyltransferase family protein (.1) AT5G01100 564 / 0 O-fucosyltransferase family protein (.1) AT5G15740 397 / 3e-132 RRT1 O-fucosyltransferase family protein (.1) AT1G22460 396 / 5e-131 O-fucosyltransferase family protein (.1) AT1G14020 394 / 5e-131 O-fucosyltransferase family protein (.1) AT3G02250 382 / 2e-126 O-fucosyltransferase family protein (.1) AT5G64600 375 / 2e-123 O-fucosyltransferase family protein (.1) AT2G03280 373 / 3e-123 O-fucosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017171 [exp] 1199 / 0 AT5G35570 828 / 0.0 O-fucosyltransferase family protein (.1) Lus10021119 [exp] 588 / 0 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10017190 [exp] 588 / 0 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 586 / 0 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 584 / 0 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10028253 [exp] 525 / 0 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1) Lus10040236 [exp] 514 / 3e-177 AT2G37980 573 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 390 / 3e-129 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 387 / 5e-128 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142400 [exp] 790 / 0 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 574 / 0 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 574 / 0 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 406 / 1e-135 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 400 / 2e-133 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 395 / 9e-131 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 392 / 2e-130 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 389 / 3e-129 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 388 / 4e-128 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 386 / 4e-128 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10021557 pacid=23182081 polypeptide=Lus10021557 locus=Lus10021557.g ID=Lus10021557.BGIv1.0 annot-version=v1.0 ATGACTCGCCGGGCCCACTCCTTTAAGCGCAACCCAAACCCCGCCGTCGGTAATTCCAACAACGGCGGAAGCACCACCAGCAGCAGCGCTGCTCACACCG CCGCCAATAACAGCTCCACCGTAAGTCCAAGGTTTGCATCCTCTGGTGACGATATCAATCTCCAGATCAGCTCTCCTAGATCTGAAGTCTTGGACCGCCA GCACCTCGTCCAGAGAATTAACGCTAAGACTAGGAAGGGCAGTGGTGGAATTGGATCCTTCGTCGGCGAATTTGAGCTCAAGGAGCGTAAGAAGCTCGGG CAGTGGATGTTTTTAGTGTTCTGCAGCCTTTCTTTGTTTCTCGGCTTTGTTAAAATTTGCGCCGGCGGTTGGTTTGGATCTTCCCTTGATCGCCCCACCT ACCACCAGGATTCGACGGATTCTTTTGTCCATCTGAATTTGGAGGAGAACTCCCAGAGTTCCGATACCGTTGAATATAAAGAAAATGGTGATGGGGATAG ACACCTTAAAGGGGTGACTGCAGACACTATCAGCGATAGTGGCAAGGTTGAAGATGTGGATAGAAATCTGAATATGGTGACAGCAGGCGTAGGTCAGATT AATGATGGCAAAGTTGATTTTTCAGGTATCTGGGCTAGACCTGAAAGTGAGAATTTCACCCAATGCATCGACCTTCCGAGAAGCCATAAAAAGTTAGATA TGAAAACAAATGGTTATATCCTTATCAATGCTAATGGGGGCTTAAATCAGATGAGGTTCGGGATCTGTGATATGGTTGCTGTGGCTAAGGTTATGAAGGC AACGTTGGTCCTTCCTTCTCTTGATCACACCTCATACTGGGCCGATGACAGTGACTTTAAGGATCTCTTCAATTGGCAACATTTCATTGAGACGCTACAA GATGAAGTACACATTATTGAGACTTTGCCGGCAGCATATTCAAGCGTGGATCCTTTTGTTAAAACACCTATTTCTTGGTCTAAGGTTAGTTATTACAAAA ATGAGGTCTTGCCACTGCTGAAGCACCACAAAGTGGTCTACTTTACCCACACTGATTCTCGTATTGCAAACAATGGAGTCCCAGATTCAATCCAGAAGCT AAGATGTCGTGTGAATTATAGGGCATTGAAATATGCCGAGCCAATAGAAGAACTTGGTAACACTCTGGTTGCGAGAATGAGAGGAGATGAAAATCCTTAC CTTGCCCTTCATTTGAGATATGAGAAGGATATGCTGGCATTCACCGGCTGCAGTCATAGCTTAACTGCGAAGGAAGATGAGGAGCTGCGAATAATGCGTT ATGAAGTGAATCATTGGAAGGAGAAAGAGATAAATGGGACAGAAAAAAGATTGTTTGGTGGTTGTCCATTGACCCCTAGGGAGACTTCACTACTGCTCAG AGCACTGGGTTTCCCATCCAGCACTAGGATCTACTTGGTAGCTGGCGAGGCTTATGGGAACCAGAGTATGCAGTATCTAGATTACTTCCCCAACATTTTC TCACACTCATCTCTCGCTACTGAAGAGGAGTTGGAACCTTTCAAGAATCATCAAAACATGTTGGCTGGTATAGATTATGTTGTTGCTCTTGAAAGTGATG CCTTTGTCTTTACTTATGATGGGAATATGGCAAAGGCTGTTCAGGGCCATCGACGATTCGAGAACTTCAAGAAGACCATCGACCCCGACAGGATGAACTT TGTGAAACTAGTGGATCAGCTAGATGAAGGGAACTTATCATGGAAAAAGTTCACTTCCAAGGTGAAGAAGCTTCACGGAGACCGAAATGGAGCACCTTAT TTTAGAGAGGCAGGTGAGATTCCGAAACTGGAGGAAAGTTTCTATGCCAACCCTCTTCCAGGATGCCTATGTGAAAAGGGAAGAAAGAAATAA
AA sequence Show only first row Show all	>Lus10021557 pacid=23182081 polypeptide=Lus10021557 locus=Lus10021557.g ID=Lus10021557.BGIv1.0 annot-version=v1.0 MTRRAHSFKRNPNPAVGNSNNGGSTTSSSAAHTAANNSSTVSPRFASSGDDINLQISSPRSEVLDRQHLVQRINAKTRKGSGGIGSFVGEFELKERKKLG QWMFLVFCSLSLFLGFVKICAGGWFGSSLDRPTYHQDSTDSFVHLNLEENSQSSDTVEYKENGDGDRHLKGVTADTISDSGKVEDVDRNLNMVTAGVGQI NDGKVDFSGIWARPESENFTQCIDLPRSHKKLDMKTNGYILINANGGLNQMRFGICDMVAVAKVMKATLVLPSLDHTSYWADDSDFKDLFNWQHFIETLQ DEVHIIETLPAAYSSVDPFVKTPISWSKVSYYKNEVLPLLKHHKVVYFTHTDSRIANNGVPDSIQKLRCRVNYRALKYAEPIEELGNTLVARMRGDENPY LALHLRYEKDMLAFTGCSHSLTAKEDEELRIMRYEVNHWKEKEINGTEKRLFGGCPLTPRETSLLLRALGFPSSTRIYLVAGEAYGNQSMQYLDYFPNIF SHSSLATEEELEPFKNHQNMLAGIDYVVALESDAFVFTYDGNMAKAVQGHRRFENFKKTIDPDRMNFVKLVDQLDEGNLSWKKFTSKVKKLHGDRNGAPY FREAGEIPKLEESFYANPLPGCLCEKGRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35570			O-fucosyltransferase family pr...		Lus10021557 [exp]	0	1
AT5G56890			Protein kinase superfamily pro...		Lus10011933 [exp]	1.4	0.8593
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034753 [exp]	2.0	0.8471
AT5G35180			Protein of unknown function (D...		Lus10040015 [exp]	2.4	0.8248
					Lus10034430 [exp]	4.5	0.8271
AT5G23870			Pectinacetylesterase family pr...		Lus10039238 [exp]	4.7	0.8107
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10030628 [exp]	7.6	0.7809
AT5G41140			Myosin heavy chain-related pro...		Lus10008012 [exp]	12.8	0.8267
AT5G35570			O-fucosyltransferase family pr...		Lus10017171 [exp]	14.4	0.7889
					Lus10010299 [exp]	15.4	0.8157
AT5G16730			Plant protein of unknown funct...		Lus10020373 [exp]	17.4	0.7980

Compare expression of checked genes

Lus10021557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.