Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06005 358 / 1e-121 FIP1 FRIGIDA interacting protein 1 (.1.2) AT5G20580 327 / 2e-109 unknown protein AT2G06040 123 / 5e-30 unknown protein AT5G21900 82 / 1e-16 RNI-like superfamily protein (.1) AT5G23340 48 / 9e-06 RNI-like superfamily protein (.1) AT1G77000 43 / 0.0003 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017167 [exp] 503 / 1e-178 AT2G06005 496 / 1e-177 FRIGIDA interacting protein 1 (.1.2) Lus10017169 [exp] 186 / 4e-52 AT2G06040 436 / 4e-143 unknown protein Lus10034779 [exp] 166 / 8e-45 AT2G06040 471 / 5e-156 unknown protein Lus10033320 [exp] 164 / 6e-44 AT2G06040 517 / 7e-174 unknown protein Lus10034013 [exp] 45 / 0.0001 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10012764 [exp] 45 / 0.0001 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10013444 [exp] 43 / 0.0004 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 42 / 0.0007 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G056500 [exp] 399 / 1e-137 AT2G06005 514 / 0.0 FRIGIDA interacting protein 1 (.1.2) Potri.006G142200 [exp] 135 / 5e-34 AT2G06040 544 / 0.0 unknown protein Potri.006G220600 [exp] 112 / 2e-26 AT2G06040 427 / 1e-139 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021558 pacid=23182089 polypeptide=Lus10021558 locus=Lus10021558.g ID=Lus10021558.BGIv1.0 annot-version=v1.0 ATGATCAGGGATTGTTCATGGCTAACTGAGGAAGAGTTCAGTGATTGCATTCAGGGCCTTGGCACCACCAGTTTAGAGGTTCTGCAACTCGACTTTTGTG GCCGAAGCTTGCCAGATTATGTTTTAGTTTCTAGTTTTGCTGGTGATGAAGCAGTTGCAGCTTTCATAGAAGCCTCCGGGGAGGCATTGAAGGATGTTTC ACTGAATAATGTCAAGCAGGTTGGTCACAACACTGCAGTGGCTATACGTAGACTTGATAGGGATTTGCAGAGTTTGGACATCTCATGGTGCCGAAACTTG GAGGATGAGGCGGTTGGGATGATCGTGGATAGCTGTTTGTCATTGAAGGTGCTCAAAGTTTTTGGGTGTGATCAGCTAACAGATGCGTTCATAAACGACC ACTCCAATCGAGTAATAGAAGTCATTGGTTATGCTGTTCTAGGCGCTGCAGCTCCTTATCTCTTCCACTCTATCACCAATTGGATCCCTTCTCTACTTTG CAGTTCTCATGTTCTTCTCCTAGTTGTCACAGGCATCTTCCAACAATATTTTGTTTCTCAAGTCCAGAAAATACGACTCCAGGGTTACTATAGTTTCAGC CAGAAGCTGAAACACATTGTCCGCCTCCCATTTGCTATTACTGCTTACGGAACTGGACTAATGCTTCTGGTTATTGTATGGGATCCCCAAATCAAATTCC TTACGGCCCCTGCATTACTGAGAATTATCATGTCGGCTGAAGCAGTTTGTGCTACGTTCTTTATGTGTGTTTATATTGGATATTTGCATCAGTACAATTC GGTAAACTCTCAGCCTGATATTTTGAAGTCGTTGTATTCTCCACTTCAACAATCAAGTCCATTAGAAGGTTTGAGGTACCAAGATGGTGGTAGACTTTCT GACCAGCAAATGGCATTACTCCAATATCAGCGTGAGAATCTCCATTTCTTGAGTGAAGAGGTGCTGCGTTTGCAAGAATGTTTAAGCAAATATGAACGGT CTAGTGAGGGTAGCACACCTCAGGTTGATGCTGCACATTTGTTAGGTGCCCGTGAACAGGAGTTAAGGACAGTAACTGCTGAGATGAATCAACTACAATC TGAGCTAAGGCTTGCTCGGTCTTTGATAGCTGATAGGGAGTCTGAATTCCAGCGGTACGTGGAAGAGAATGAGAGGCTGCGAGCTATCTTAGGAGAATGG AGTACTCGTGCTGCAAAGCTTGAACGAGCACTGGAGGCTGAACGGATGTCGAATCTGGAATTGCTAAAAAAGGTTTCATCATATTCCAACAAAAATCAAT CAAATCCTTCAAACAGAACAGATTGA
AA sequence Show only first row Show all	>Lus10021558 pacid=23182089 polypeptide=Lus10021558 locus=Lus10021558.g ID=Lus10021558.BGIv1.0 annot-version=v1.0 MIRDCSWLTEEEFSDCIQGLGTTSLEVLQLDFCGRSLPDYVLVSSFAGDEAVAAFIEASGEALKDVSLNNVKQVGHNTAVAIRRLDRDLQSLDISWCRNL EDEAVGMIVDSCLSLKVLKVFGCDQLTDAFINDHSNRVIEVIGYAVLGAAAPYLFHSITNWIPSLLCSSHVLLLVVTGIFQQYFVSQVQKIRLQGYYSFS QKLKHIVRLPFAITAYGTGLMLLVIVWDPQIKFLTAPALLRIIMSAEAVCATFFMCVYIGYLHQYNSVNSQPDILKSLYSPLQQSSPLEGLRYQDGGRLS DQQMALLQYQRENLHFLSEEVLRLQECLSKYERSSEGSTPQVDAAHLLGAREQELRTVTAEMNQLQSELRLARSLIADRESEFQRYVEENERLRAILGEW STRAAKLERALEAERMSNLELLKKVSSYSNKNQSNPSNRTD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10021558 [exp]	0	1
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10015090 [exp]	2.2	0.8616
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10043256 [exp]	4.2	0.7606
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10026202 [exp]	4.7	0.8395
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032571 [exp]	5.0	0.8007
AT5G06780		AtEML2, ACK4	EMSY-like 2, Emsy N Terminus (...		Lus10021038 [exp]	6.3	0.8159
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	6.7	0.8188
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10041666 [exp]	11.5	0.7876
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10032737 [exp]	12.1	0.7853
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Lus10005562 [exp]	12.7	0.7511
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	14.1	0.7748

Compare expression of checked genes

Lus10021558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.