Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06025 217 / 1e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G38130 43 / 8e-05 ATMAK3 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT4G28030 42 / 0.0002 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT5G11340 40 / 0.0004 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT1G03650 39 / 0.0008 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019975 [exp] 49 / 2e-06 AT4G28030 322 / 3e-111 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10013120 [exp] 41 / 0.0003 AT5G11340 256 / 8e-89 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10008088 [exp] 40 / 0.0007 AT5G11340 249 / 2e-85 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142100 [exp] 250 / 1e-82 AT2G06025 347 / 1e-120 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.006G248900 [exp] 40 / 0.0004 AT5G11340 280 / 3e-98 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10021559 pacid=23182139 polypeptide=Lus10021559 locus=Lus10021559.g ID=Lus10021559.BGIv1.0 annot-version=v1.0 ATGAGGTTGCTAAAAGAGCAGTTAGGGGTTCTCTTCATGTCAAATGAATCCGGGTATATCCAGACGAAGAAGAAGAGGGAAGAGCTCTCGTTGCACTTGC ATCATCCTCCTCACCATCATCATCTTCATCATCCCGCTGCTGCGTTTAGTCCTCAGCAGGATCCTCCGAGGCTCCCTCATATGCGCTTTAACCGCCTTCA GATACCCGATGACCAAGAGAACAAGATGGAGTTTGGCAATTTCGTCGCAAGAAATGCTATCATTGATGAAGAATACTGGACAGCAGCCTGGCTGCGAGCT GAAGCTCTCTGGGAGGCCAAAAGCAGATCTGGCATGGTGAACACAAGATTTGGAGAGCAGGAGTTCCATGCTATTAGAAACCGCATCAATGGTCCATATG GGAACAAGTGTAAATGCATAATCACAGTAAGAAAGCATGATGGGAATGTTAAACGCACTGTACTGAAGAGTGTGGTTGCGACTCTCGATTTGAGCATCCG GTGTTTGCTTCCGGGGGAGAGATACCCAGAGGAGCATGGAAGGTCACCTCAGTTTTGCAGCATGGATGGAGCAGGAAAGAACAGATATAGTTATATCACC AACTTGGTAGTGTCAAAGTCGGCTCGTGGTCAGGGGATAGCAAGTAACATGATGCAATTTGCAATAGGAACAGCCAAGTCCAATGGAGGTGTGGAGCATA TGTACATTCATGTGGATAGAAGCAATAAGCTTGCACAGAAGCTCTATGAAAAGATGGGGTTTGAGATGGTAGAAGAGGCAACTGATAGATTGGTGGAAGA AGATACTTACCTCCTAAGATTGAAGCTTGTACAGAATTAG
AA sequence Show only first row Show all	>Lus10021559 pacid=23182139 polypeptide=Lus10021559 locus=Lus10021559.g ID=Lus10021559.BGIv1.0 annot-version=v1.0 MRLLKEQLGVLFMSNESGYIQTKKKREELSLHLHHPPHHHHLHHPAAAFSPQQDPPRLPHMRFNRLQIPDDQENKMEFGNFVARNAIIDEEYWTAAWLRA EALWEAKSRSGMVNTRFGEQEFHAIRNRINGPYGNKCKCIITVRKHDGNVKRTVLKSVVATLDLSIRCLLPGERYPEEHGRSPQFCSMDGAGKNRYSYIT NLVVSKSARGQGIASNMMQFAIGTAKSNGGVEHMYIHVDRSNKLAQKLYEKMGFEMVEEATDRLVEEDTYLLRLKLVQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06025			Acyl-CoA N-acyltransferases (N...		Lus10021559 [exp]	0	1
AT1G25210		AtLpxC5	lipid X C5, UDP-3-O-acyl N-ace...		Lus10021282 [exp]	1.4	0.8682
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	3.5	0.8793
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	5.2	0.8645
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	5.3	0.8514
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	11.7	0.8580
AT5G52880			F-box family protein (.1)		Lus10027549 [exp]	13.9	0.8535
AT5G47435			formyltetrahydrofolate deformy...		Lus10028958 [exp]	14.3	0.8383
AT5G07740			actin binding (.1)		Lus10015725 [exp]	15.0	0.8184
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	15.3	0.8579
AT1G45150			unknown protein		Lus10002387 [exp]	15.5	0.8451

Compare expression of checked genes

Lus10021559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.