Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06530 150 / 2e-46 VPS2.1 SNF7 family protein (.1) AT1G03950 55 / 7e-10 VPS2.3 vacuolar protein sorting-associated protein 2.3 (.1) AT5G44560 50 / 4e-08 VPS2.2 SNF7 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017166 [exp] 171 / 1e-54 AT2G06530 357 / 2e-126 SNF7 family protein (.1) Lus10015642 [exp] 146 / 2e-44 AT2G06530 338 / 1e-118 SNF7 family protein (.1) Lus10037660 [exp] 141 / 8e-43 AT2G06530 358 / 6e-127 SNF7 family protein (.1) Lus10033914 [exp] 61 / 8e-12 AT1G03950 278 / 5e-96 vacuolar protein sorting-associated protein 2.3 (.1) Lus10038407 [exp] 56 / 4e-10 AT5G44560 323 / 5e-113 SNF7 family protein (.1.2) Lus10023396 [exp] 54 / 4e-09 AT5G44560 270 / 2e-91 SNF7 family protein (.1.2) Lus10003538 [exp] 44 / 1e-06 AT1G03950 121 / 3e-36 vacuolar protein sorting-associated protein 2.3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065100 [exp] 151 / 8e-47 AT2G06530 332 / 9e-117 SNF7 family protein (.1) Potri.001G170400 [exp] 131 / 5e-39 AT2G06530 326 / 2e-114 SNF7 family protein (.1) Potri.006G144300 [exp] 69 / 7e-16 AT2G06530 62 / 7e-13 SNF7 family protein (.1) Potri.011G154700 [exp] 58 / 6e-11 AT5G44560 331 / 1e-116 SNF7 family protein (.1.2) Potri.001G442500 [exp] 57 / 2e-10 AT5G44560 328 / 3e-115 SNF7 family protein (.1.2) Potri.005G227000 [exp] 53 / 5e-09 AT1G03950 309 / 3e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.002G035900 [exp] 51 / 2e-08 AT1G03950 308 / 8e-108 vacuolar protein sorting-associated protein 2.3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF03357 [flax] [poplar] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Lus10021561 pacid=23182121 polypeptide=Lus10021561 locus=Lus10021561.g ID=Lus10021561.BGIv1.0 annot-version=v1.0 ATGATATTATTTGGTTGGATGCAGACGTTGAAATCAACGCAGGCTATGGGAGAAGCAATGAAAGGAGTGACGAAGGCAATGGGGCAGATGAACAAGCAGA TGAACTTGCCAGCACTTCAAAAAATAATGATGGAATTTGAGAGACAGAATGAGAGAATGGAGATGACGAGCGAGGTAATGGGAGATGCGATGGATGATGC ATTGGGAGAGGATGATGAAGAAGAGGAAACAGAAGAGCTAGTGAACCAGGTCCTTGACGAGATAGGGATCGACATCAACCAAGAGTTGGTCAATGCACCA TCTTCGGCTGTAGCCGCACCAGCTGCAAAGGGCAAGGTTGCACAGGTAGAATCAGCAGCTGCAGTGGGCGAGGACAGTGGGATAGATAGTGATCTACAGG CAAGGTTAGATAACTTGAGGAAGATGTAA
AA sequence Show only first row Show all	>Lus10021561 pacid=23182121 polypeptide=Lus10021561 locus=Lus10021561.g ID=Lus10021561.BGIv1.0 annot-version=v1.0 MILFGWMQTLKSTQAMGEAMKGVTKAMGQMNKQMNLPALQKIMMEFERQNERMEMTSEVMGDAMDDALGEDDEEEETEELVNQVLDEIGIDINQELVNAP SSAVAAPAAKGKVAQVESAAAVGEDSGIDSDLQARLDNLRKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10021561 [exp]	0	1
AT2G30440		Plsp2B, TPP	plastidic type I signal peptid...		Lus10011671 [exp]	1.0	0.8861
AT4G08230			glycine-rich protein (.1.2)		Lus10024100 [exp]	4.6	0.8626
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	5.8	0.8757
AT1G27000			Protein of unknown function (D...		Lus10037210 [exp]	7.5	0.8475
AT3G24740			Protein of unknown function (D...		Lus10022809 [exp]	8.0	0.8253
AT5G41560			unknown protein		Lus10028758 [exp]	9.8	0.8360
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10019003 [exp]	10.7	0.8127
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	12.2	0.8553
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011861 [exp]	14.5	0.8176
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10036484 [exp]	14.8	0.8180

Compare expression of checked genes

Lus10021561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.