Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13640 987 / 0 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G44830 787 / 0 Lecithin:cholesterol acyltransferase family protein (.1) AT1G04010 82 / 6e-16 ATPSAT1 phospholipid sterol acyl transferase 1 (.1) AT1G27480 43 / 0.0007 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017165 [exp] 1372 / 0 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10015639 [exp] 1006 / 0 AT5G13640 1053 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10037657 [exp] 993 / 0 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10019519 [exp] 804 / 0 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10043360 [exp] 486 / 5e-167 AT3G44830 581 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10008234 [exp] 88 / 1e-17 AT1G04010 991 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10003615 [exp] 87 / 2e-17 AT1G04010 1005 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10024927 [exp] 82 / 5e-16 AT1G04010 1021 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10043361 [exp] 75 / 8e-16 AT5G13640 85 / 4e-20 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G063100 [exp] 1015 / 0 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.001G171000 [exp] 996 / 0 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.004G190100 [exp] 822 / 0 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Potri.009G150800 [exp] 213 / 2e-65 AT3G44830 204 / 9e-63 Lecithin:cholesterol acyltransferase family protein (.1) Potri.014G195500 [exp] 85 / 5e-17 AT1G04010 1040 / 0.0 phospholipid sterol acyl transferase 1 (.1) Potri.015G121000 [exp] 52 / 9e-07 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G121596 [exp] 49 / 1e-05 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G014400 [exp] 47 / 3e-05 AT1G27480 535 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G076300 [exp] 45 / 0.0001 AT3G03310 632 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10021564 pacid=23182092 polypeptide=Lus10021564 locus=Lus10021564.g ID=Lus10021564.BGIv1.0 annot-version=v1.0 ATGCCGCTCTTGAGGCGGAGGTGGAGAGCTCCGAAATCTGATTCTTCTGGCGTTGACAGAGAGAGGGACCCGTCTTGTCAGATTCGCCGAGGAGAAGGCA CCGACAACGACTTGGCTGACGGAGACGGTGAGAAGTGGAATATAGGGGAGGATAAGCAAGGGAGGTTGAAGCCGAGCCGCGGTTGTGATGGCAAAAGGAA GGATAGGAGGAAGTGGTCTTGCGTTGACAGCTGTTGCTGGTTCATAGGCTTTATATGCTCCTCGTGGTGGTTTTTGCTCTTCCTGTACAATGCAATGCCT TCTTCAATCCCTCAGTTCGTCACGGAGGCGATTACAGGGGGGCCGATGCCTGACCCGCCTGGCCTCAAGTTGAAGAAGGAAGGCTTGATGGTGAAGCACC CGGTGGTATTCGTCCCTGGGATCGTAACCGGTGGGCTTGAGTTGTGGGAGGGACATCACTGTGCAGAAGGATTGTTCAGAAAGCGACTATGGGGTGGCAC TTTTGGTGAAGTGTACAAGAGACCATTATGTTGGGTAGAGCACATGTCACTGGATAATGAAACAGGACTTGACCCTCCTGGTATAAAGGTCAGACCAGTA TCTGGCCTCGTGGCTGCAGACTACTTTGCTGCGGGGTATTTTGTATGGGCAGTTTTAATTGCTAATTTGGCTCAAATAGGATATGAGGAGAAAACCATGT ATATGGCTGCATACGACTGGAGAATGTCATTTCAGAATACAGAGGTCAGGGACCAAACACTCAGCAGGATGAAAAGTAATATAGAACTCATGGTTGCCAC TAATGGAGGAAACAAGGTTGTCGTCATTCCACATTCAATGGGGGTTCTTTACTTTCTTCATTTCATGAAATGGGTGGAAGCACCTGCTCCAATGGGCGGT GGGGGAGGATCAAAGTGGTGTGCTAAGCATATAAAGGCGGTGATGAATATAGGTGGACCTTTTTTGGGGGTACCTAAAGTAGTCTCTGGACTTTTCTCTG GTGAAGGCAGAGATATTGCTGTTGCCAGGGCTTTTGCACCAGGCTTTCTGGACAAGGATGTTTTTAGTCTCCAAACTCTACAACATTTTATGCGCATGAC TCGTACATGGGATTCAACCATGTCTATGATACCAAAAGGTGGGGAAACCATTTGGGGTGGCCTTGATTGGTCACCGGAAGAGGAATATAGTTGTGGCACT AAGAAGTTGAAGAACAACACCCATATGGTAGGAGAAAACAGGAAAGGTGGTTTGAGTCCTCCTGAAATAACAAATTATGGGAGAATTATCTCGTTTGGAA AAGATGCAGCCACGCAGCACTCTTCCAAGATTGCCAGAATTGATTTCAGGGATGCTGTTAAGGGTAGTCACCCAGGAAATCACTGTGATATTTGGACAGA GTATCAAGAAATTGGAGTTGGTGGCATCAAAGCTGTTACTGATTACAAATTGTACACAGCTAGTTCAGTTCTAGAAATGCTGGACTTTGTTGCACCCAAG TTAATGGCAAGAGGAAATGCTCATTTTTCGCATGGAATTGCAGACAATCTAGATGACCCAAAATACCAACACTTCAAATACTGGTCAAACCCCTTGGAGA CAAAATTACCAAATGCTCCTGACATGGAGATCTATTCATTGTATGGGGTTGGAATACCCACTGAAAGAGCGTATGTTTACAAGCAAACCTCAGCAGGGGA ATGCTCAATTCCTTTCCAGATTGATGCATCGGCAGGTGATGATAGCGAGAAGTCTTGCATAAAAGGTGGAGTATTGTCAGTGAACGGGGACGAGACGGTG CCAGTTATTAGTGCTGGATTCATGTGTGCAAAAGGGTGGAGAGGGAAAACAAGATTCAACCCAACAGGGATTCGTACTCACATAAGGGAATATGATCATG CACCACCAGCCACCCTTCTGGAAGGAAGGGGAACCCAAAGCGGTGCTCATGTTGACATAATGGGCAATTTTGCATTGATAGAGGATATCATCAGAGTTGC AGCAGGGGCTTCTGGAGAAGATTTGGGAGGAGACAGGGTTTACTCGGACATTTTTAAATGGTCTGACAAGATTAAGTTGCGGCTTTAA
AA sequence Show only first row Show all	>Lus10021564 pacid=23182092 polypeptide=Lus10021564 locus=Lus10021564.g ID=Lus10021564.BGIv1.0 annot-version=v1.0 MPLLRRRWRAPKSDSSGVDRERDPSCQIRRGEGTDNDLADGDGEKWNIGEDKQGRLKPSRGCDGKRKDRRKWSCVDSCCWFIGFICSSWWFLLFLYNAMP SSIPQFVTEAITGGPMPDPPGLKLKKEGLMVKHPVVFVPGIVTGGLELWEGHHCAEGLFRKRLWGGTFGEVYKRPLCWVEHMSLDNETGLDPPGIKVRPV SGLVAADYFAAGYFVWAVLIANLAQIGYEEKTMYMAAYDWRMSFQNTEVRDQTLSRMKSNIELMVATNGGNKVVVIPHSMGVLYFLHFMKWVEAPAPMGG GGGSKWCAKHIKAVMNIGGPFLGVPKVVSGLFSGEGRDIAVARAFAPGFLDKDVFSLQTLQHFMRMTRTWDSTMSMIPKGGETIWGGLDWSPEEEYSCGT KKLKNNTHMVGENRKGGLSPPEITNYGRIISFGKDAATQHSSKIARIDFRDAVKGSHPGNHCDIWTEYQEIGVGGIKAVTDYKLYTASSVLEMLDFVAPK LMARGNAHFSHGIADNLDDPKYQHFKYWSNPLETKLPNAPDMEIYSLYGVGIPTERAYVYKQTSAGECSIPFQIDASAGDDSEKSCIKGGVLSVNGDETV PVISAGFMCAKGWRGKTRFNPTGIRTHIREYDHAPPATLLEGRGTQSGAHVDIMGNFALIEDIIRVAAGASGEDLGGDRVYSDIFKWSDKIKLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10021564 [exp]	0	1
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10010727 [exp]	10.9	0.8264
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10017050 [exp]	11.1	0.8251
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10029215 [exp]	13.5	0.7991
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10007349 [exp]	13.7	0.8210
AT3G53810			Concanavalin A-like lectin pro...		Lus10016506 [exp]	14.5	0.8216
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10021370 [exp]	15.3	0.8178
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026609 [exp]	16.1	0.8054
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020772 [exp]	20.1	0.8140
AT3G20600		NDR1	non race-specific disease resi...		Lus10043067 [exp]	21.4	0.8204
AT4G17140			pleckstrin homology (PH) domai...		Lus10003381 [exp]	22.2	0.8102

Compare expression of checked genes

Lus10021564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.