Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20540 340 / 6e-115 ATBRXL4, BRX-LIKE4 BREVIS RADIX-like 4 (.1) AT1G54180 313 / 3e-105 ATBRXL3, BRX-LIKE3 ARABIDOPSIS THALIANA BREVIS RADIX-LIKE 3, BREVIS RADIX-like 3 (.1.2) AT3G14000 311 / 3e-104 ATBRXL2, BRX-LIKE2 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) AT1G31880 156 / 3e-44 BRX, NIP3;1, NLM9 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) AT2G35600 134 / 3e-36 BRXL1, ATBRXL1, BRX-LIKE1 ARABIDOPSIS THALIANA BREVIS RADIX LIKE 1, BREVIS RADIX-like 1 (.1) AT2G21030 90 / 2e-21 unknown protein AT5G19420 92 / 4e-20 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 90 / 3e-19 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 66 / 1e-11 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 66 / 1e-11 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017164 [exp] 511 / 0 AT5G20540 457 / 1e-161 BREVIS RADIX-like 4 (.1) Lus10008459 [exp] 293 / 4e-97 AT3G14000 441 / 1e-155 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Lus10000884 [exp] 290 / 1e-95 AT3G14000 439 / 3e-154 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Lus10030349 [exp] 229 / 2e-72 AT1G31880 410 / 5e-144 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Lus10007898 [exp] 200 / 6e-62 AT1G31880 363 / 1e-126 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Lus10039525 [exp] 82 / 2e-16 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 81 / 4e-16 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 81 / 4e-16 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10029772 [exp] 80 / 6e-16 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G144900 [exp] 413 / 1e-143 AT5G20540 422 / 2e-147 BREVIS RADIX-like 4 (.1) Potri.018G064900 [exp] 390 / 1e-134 AT5G20540 426 / 1e-148 BREVIS RADIX-like 4 (.1) Potri.001G170800 [exp] 319 / 3e-107 AT3G14000 467 / 2e-165 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Potri.003G063200 [exp] 318 / 1e-106 AT3G14000 492 / 4e-175 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Potri.001G131800 [exp] 245 / 3e-78 AT1G31880 462 / 4e-164 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Potri.003G101500 [exp] 244 / 7e-78 AT1G31880 434 / 8e-153 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Potri.T124906 [exp] 84 / 2e-17 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 84 / 3e-17 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 84 / 4e-17 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 81 / 2e-16 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3
Representative CDS sequence Show only first row Show all	>Lus10021565 pacid=23182093 polypeptide=Lus10021565 locus=Lus10021565.g ID=Lus10021565.BGIv1.0 annot-version=v1.0 ATGCTGACCTGTATAGCTCGATCCAAACAAGCCGGAAATGAGCCCGACGGAAACGCCGCCAACACTTCCAATGCCAAGAACAACCAAGCTATCAAATCCT TCACCTCCCAGCTGAAAGACATGGCTCTGAAGGCGTCCGGAGCATACAAGCACTGCGCGCCCTGCTCTACTACACCTAACCAGAACCGGTTCCAAACAAT CCCGACGTCAGAACCGGAGGCGGAGTCGGACCGGTTTCGGTGGCAGCTGAAGAGGACGATGAGCTCGACGACGCCGAGGACGTGGGGGAAGGAGATGGAA GCGAGGTTGAAGGGGATATCGAGCTCGAGCGGCGAAGGGTCTACGCCAGCTAGCTCCGTCAACGGAAGCGGGCGACGCGTGGAGCCGCCGATCGTGTTGG TGGAAGAGAGCGAGCCCAAGGAATGGGTGGCCCAGGTGGAGCCCGGTGTCCTCATTACTTTCGTCTCGCTTACTCGCGGAGGCAACGATCTCAGGAGGAT AAGGTTCAGGGGACTCATTAACAAGCAGCCTAAAAAGATGTTTCTCTTTGACACCAGCCGAGACATGTTCAATAAGTGGCAAGCTCAGAAATGGTGGGCG GAGAACTATGACAAGGTCATGGAACTTTATAATGTCCAAAGGCTTAGCCGCCAAGCCTTTCATCTTCCTACACCTCCAACATCTGAAGACGAGAGCTCCA AAATGGAATCAGCTGTAGACAGTCCTGTAACACCGCCATTGAACCGAGAGCGTTTACCTCGTAGGCCAACAGGAATGGGAATGAGCTACTCGTCCTCGGA CTCGCTGGACTATCATCACCCCATTCATATGACCCAACAATACCCCGACTCGGTTACCCCAAAACTCTCCAGTATAAGTGGGGCTAAGACAGAAATATCA TCTTCTATGGATGCATCTATGCGAAGTAGCTCATCGATGTCTATCAGTAATGCCAGCGATATGGAGAATGAATGGGTTGAACAAGATGAACCAGGCGTGT ACATCACAGTCAGAGCCTTGGCCGGTGGAAAGAGGGAGCTCAGAAGAGTTAGGTTCAGCCGGGAAAAGTTTGGAGAGATGCATGCAAGATTATGGTGGGA AGAGAACCGGGCAAGAATACACCAAAATTACTTGTAG
AA sequence Show only first row Show all	>Lus10021565 pacid=23182093 polypeptide=Lus10021565 locus=Lus10021565.g ID=Lus10021565.BGIv1.0 annot-version=v1.0 MLTCIARSKQAGNEPDGNAANTSNAKNNQAIKSFTSQLKDMALKASGAYKHCAPCSTTPNQNRFQTIPTSEPEAESDRFRWQLKRTMSSTTPRTWGKEME ARLKGISSSSGEGSTPASSVNGSGRRVEPPIVLVEESEPKEWVAQVEPGVLITFVSLTRGGNDLRRIRFRGLINKQPKKMFLFDTSRDMFNKWQAQKWWA ENYDKVMELYNVQRLSRQAFHLPTPPTSEDESSKMESAVDSPVTPPLNRERLPRRPTGMGMSYSSSDSLDYHHPIHMTQQYPDSVTPKLSSISGAKTEIS SSMDASMRSSSSMSISNASDMENEWVEQDEPGVYITVRALAGGKRELRRVRFSREKFGEMHARLWWEENRARIHQNYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10021565 [exp]	0	1
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	2.0	0.8563
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10013427 [exp]	2.0	0.8560
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	4.9	0.8083
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	5.5	0.8532
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10024512 [exp]	6.0	0.8363
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	7.3	0.7991
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10014408 [exp]	11.7	0.7809
AT5G61390			Polynucleotidyl transferase, r...		Lus10015719 [exp]	13.9	0.7326
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	14.5	0.7969
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	16.3	0.8078

Compare expression of checked genes

Lus10021565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.