Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17930 54 / 4e-08 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 54 / 4e-08 hydrolases;protein serine/threonine phosphatases (.1) AT2G25010 52 / 2e-07 Aminotransferase-like, plant mobile domain family protein (.1) AT2G04865 47 / 9e-06 Aminotransferase-like, plant mobile domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039393 [exp] 264 / 3e-88 AT1G17930 73 / 3e-14 Aminotransferase-like, plant mobile domain family protein (.1) Lus10005957 [exp] 256 / 1e-84 AT1G48120 75 / 1e-14 hydrolases;protein serine/threonine phosphatases (.1) Lus10033313 [exp] 254 / 2e-83 AT1G17930 72 / 1e-13 Aminotransferase-like, plant mobile domain family protein (.1) Lus10005495 [exp] 213 / 3e-69 AT1G17930 54 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10004830 [exp] 198 / 9e-63 AT1G17930 48 / 4e-06 Aminotransferase-like, plant mobile domain family protein (.1) Lus10005482 [exp] 194 / 1e-62 AT1G17930 41 / 1e-04 Aminotransferase-like, plant mobile domain family protein (.1) Lus10037814 [exp] 189 / 5e-61 ND 37 / 0.001 Lus10023763 [exp] 188 / 2e-60 ND / Lus10022091 [exp] 197 / 3e-57 AT3G23070 860 / 0.0 CRM family member 3A (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10021566 pacid=23182084 polypeptide=Lus10021566 locus=Lus10021566.g ID=Lus10021566.BGIv1.0 annot-version=v1.0 ATGGCGGTCATCAACGACGATGAGGCTCCTCGAGTCCCTCTCACCGGAGCTGGTAATATCCCAGTCGCTGCTGATTCCGCCTCCCAAGGTGCCGTTCTAG GCATCCTCGACATCACCAACCCCTTCTACATCCACCCCTCCGAACATTGGGGCCAGAACCTGGTGTCCACTGTTCTCACAGAGTATAACTACTCGGAGTG GTCCATGGCGATTTCCATGAGGAACGGCGGGGCCGCCCGTCTGGTGTTGTGGGAGTATTTGATGGGGGGCGTGTCCACTGTGTCACGATATGCTAGGGGG ACTAGGGCTCTAGCATGGCTGTACCACGAGCTGGGTAAGACGAGCATGGCTAAGTGTAAGGGGATGGCGGGGAGCGTGTCTCTACTTCAGTCTTGGATTC ACGAGTACTTCCCTAGTACTCGTGCTGCTAGACTAGTGGCTCGGGAGCGGGGTGATGTCAAGGCCTTGGTTGGGCGGTGGAACAGTAGCGAGCTGTCAGA TAGATCATACGAGTTCATGCACCGTAATCTGGAGTACTACCGTCATCTTCTTGATGATATGACCGCACGGGATGTGATTTGGCTGTCATTTGGGCCACGT CCCGAGGTAGAGGTCCCCGATTCGACGTTTCATGGCGTGATTCGGTTCGCGACGACAACAGAGTACTATAATCCGACACATGTGGTTAGACAGTTCGGCT ACGCACAGATGATTCCGCATCTTATCCCTGCCCCTACGAGGGCATTTGGGCGGCTGAGCCTAATAGGTACCTTGTTGAGTGGGCACAACACATATAGAGC CTGGAGGGACAAGGACTAG
AA sequence Show only first row Show all	>Lus10021566 pacid=23182084 polypeptide=Lus10021566 locus=Lus10021566.g ID=Lus10021566.BGIv1.0 annot-version=v1.0 MAVINDDEAPRVPLTGAGNIPVAADSASQGAVLGILDITNPFYIHPSEHWGQNLVSTVLTEYNYSEWSMAISMRNGGAARLVLWEYLMGGVSTVSRYARG TRALAWLYHELGKTSMAKCKGMAGSVSLLQSWIHEYFPSTRAARLVARERGDVKALVGRWNSSELSDRSYEFMHRNLEYYRHLLDDMTARDVIWLSFGPR PEVEVPDSTFHGVIRFATTTEYYNPTHVVRQFGYAQMIPHLIPAPTRAFGRLSLIGTLLSGHNTYRAWRDKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17930			Aminotransferase-like, plant m...		Lus10021566 [exp]	0	1
					Lus10002099 [exp]	4.2	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	6.0	1.0000
					Lus10025316 [exp]	7.2	1.0000
					Lus10011594 [exp]	7.3	1.0000
					Lus10034849 [exp]	7.9	0.9081
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10030510 [exp]	8.1	1.0000
AT5G39200			unknown protein		Lus10030710 [exp]	8.8	1.0000
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10033233 [exp]	10.8	1.0000
AT4G17920			RING/U-box superfamily protein...		Lus10030972 [exp]	11.2	1.0000
AT5G53820			Late embryogenesis abundant pr...		Lus10003056 [exp]	11.5	0.8712

Compare expression of checked genes

Lus10021566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.