Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63000 610 / 0 NPL41 NPL4-like protein 1 (.1) AT2G47970 602 / 0 Nuclear pore localisation protein NPL4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017163 [exp] 770 / 0 AT3G63000 670 / 0.0 NPL4-like protein 1 (.1) Lus10027618 [exp] 318 / 2e-108 AT2G47970 289 / 1e-98 Nuclear pore localisation protein NPL4 (.1.2) Lus10027617 [exp] 182 / 3e-50 AT5G12080 839 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G213600 [exp] 675 / 0 AT3G63000 596 / 0.0 NPL4-like protein 1 (.1) Potri.014G135590 [exp] 674 / 0 AT3G63000 609 / 0.0 NPL4-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF05021 [flax] [poplar] NPL4 NPL4 family CL0072 [flax] [poplar] Ubiquitin PF11543 [flax] [poplar] UN_NPL4 Nuclear pore localisation protein NPL4
Representative CDS sequence Show only first row Show all	>Lus10021567 pacid=23182115 polypeptide=Lus10021567 locus=Lus10021567.g ID=Lus10021567.BGIv1.0 annot-version=v1.0 ATGATGCTCAGAATCCGCAGCCGAGATGGCCTGGAGCGCGTCTCCGTTGACAACCCCACCACCACCACCGTCGCTCAGCTCAAAACCCTAATCCAGTCAC AGCTTCAAATCCCTATCCACAACCAAACCCTCTCCACCAACCAGAACCTCCTCCTTGCTAAATCCCCTTCCGATCTCCTCAACTTCACCGACATGGCCGA CCCCGCCACACCCCTCTCCTCCCTTAAACTCGGCCATGGCTCCATCATCTTCTTGTCATACGACGGCGAGAGGAACATAGCCGGCCCCACTGTCTTCCCC TCCGGATCATTCGGCCGCAAGATGACCATGGACGATCTGATCGCCAAGCAGATGAAGGTCACCAGGCAGGAGAACCCGCATTGCGACTCTGTCTCCTTCG ATCGCGACTGTGCCAATGCGTTCCAGCACTACGTCAACGAGACCCTAGCTTTCGCTGTCAAGAGGGGCGGATTTATGTACGGGACCGTCTCAGAAGACGG CAAGGTCCAAGTGGATTTCATATACGAACCCCCGCAGCAAGGGACCGAACATGTTCTGATGCTTTTGAGGGACTCCAGCGAAGAGAAATCTGTGGACTCC ATTGCTACTGGTTTAGGGATGAGGAAAGTTGGCTTCATATTCACGCAGACCATATCTCAGGACAAAAAAGATTACACCTTGTCTAATAGGGAGGTTCTTC AAGCTGTGGAGCTTCACGCGGAGAGCCAGTTAAAGGAATGGGTTACTGCGGTTGTGAAGTTGGAGGTGAGCGAGGACGGTGCAGCTGATGTTCACTTCGA AGCCTTTCAGCTAAGTGATATGTGTGTTAGGCTATTTAAGGAAGGATGGTTCGAGACTGAGATTGGAGAAGGTGTGGATCCTAAGTTGTCTATCATGAAG AAGGATGTCGTTCTTGGTGTTAAAGATGTCAAGGAGGTCGACAATGATTTCTTCCTTGTTGTCGTTAAGATTTTGGATCACATGGGGCCTCTTTCATCGA CATTCCCGATAGAGAACAGGGTGAGCCAAGTGACAATGAAGGCACTGAAGAGTCAACTTGAACGTGCGAGAAGTCTTCCATTTGTGAAAAGAATATCTGA TTTCCATCTGCTGCTGTTTCTAGCTAGGTTTCTAGACCATGGTTCTGATGTTCCTGCACTAGCTCAGTGCGTTGTGACACAGACAGCAGTGCCAGAAGGA TATCAAATCCTGATTGAATCCATGGCCAGCACTGCTTGA
AA sequence Show only first row Show all	>Lus10021567 pacid=23182115 polypeptide=Lus10021567 locus=Lus10021567.g ID=Lus10021567.BGIv1.0 annot-version=v1.0 MMLRIRSRDGLERVSVDNPTTTTVAQLKTLIQSQLQIPIHNQTLSTNQNLLLAKSPSDLLNFTDMADPATPLSSLKLGHGSIIFLSYDGERNIAGPTVFP SGSFGRKMTMDDLIAKQMKVTRQENPHCDSVSFDRDCANAFQHYVNETLAFAVKRGGFMYGTVSEDGKVQVDFIYEPPQQGTEHVLMLLRDSSEEKSVDS IATGLGMRKVGFIFTQTISQDKKDYTLSNREVLQAVELHAESQLKEWVTAVVKLEVSEDGAADVHFEAFQLSDMCVRLFKEGWFETEIGEGVDPKLSIMK KDVVLGVKDVKEVDNDFFLVVVKILDHMGPLSSTFPIENRVSQVTMKALKSQLERARSLPFVKRISDFHLLLFLARFLDHGSDVPALAQCVVTQTAVPEG YQILIESMASTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	0	1
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	1.4	0.9388
AT5G67020			unknown protein		Lus10019344 [exp]	2.0	0.9491
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	2.4	0.9385
AT5G08060			unknown protein		Lus10021149 [exp]	4.0	0.9336
AT1G65720			unknown protein		Lus10031363 [exp]	4.5	0.9331
AT5G67020			unknown protein		Lus10019345 [exp]	4.9	0.9198
AT3G61770			Acid phosphatase/vanadium-depe...		Lus10030253 [exp]	5.7	0.9136
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10036181 [exp]	6.6	0.9095
AT1G11360			Adenine nucleotide alpha hydro...		Lus10037867 [exp]	6.6	0.9174
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10027290 [exp]	6.9	0.9166

Compare expression of checked genes

Lus10021567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.