Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20610 677 / 0 unknown protein AT5G26160 206 / 3e-54 unknown protein AT1G42550 89 / 1e-17 PMI1 plastid movement impaired1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017162 [exp] 1767 / 0 AT5G20610 762 / 0.0 unknown protein Lus10039886 [exp] 96 / 9e-20 AT1G42550 816 / 0.0 plastid movement impaired1 (.1) Lus10002170 [exp] 96 / 1e-19 AT1G42550 818 / 0.0 plastid movement impaired1 (.1) Lus10025003 [exp] 86 / 3e-17 AT5G20610 97 / 2e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G145500 [exp] 932 / 0 AT5G20610 565 / 0.0 unknown protein Potri.006G224200 [exp] 566 / 0 AT5G26160 641 / 0.0 unknown protein Potri.005G255500 [exp] 89 / 9e-18 AT1G42550 754 / 0.0 plastid movement impaired1 (.1) Potri.002G006100 [exp] 87 / 5e-17 AT1G42550 796 / 0.0 plastid movement impaired1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021568 pacid=23182140 polypeptide=Lus10021568 locus=Lus10021568.g ID=Lus10021568.BGIv1.0 annot-version=v1.0 ATGTCGAGAGTCGAACATGGGAAGAAGACTAGGGATGATGAATCAGTAGAGAATAATTTGTTATTGAATGACTTGCAATCTATAAGCAAAGCTCTGAACC TGGACAAACAAAACCCATCCAGCACTTTACTTCCCACTGCCAGTAGGGAGGACCCTGGAGAGGAGAAATTGTTACTGAATGAGTTGCAAACTATAAGCAA AGCTCTGTACCTTGATAGACCAAAACCTTCGAGGACTTTACTTCCCACTGCCAGCAGCCGAGCAAAAGCAAGCGGGAGATCACCAACCGTAGTCGAACCC AAGACAAAACCCAAGACTGTGCCTGTTAATGACGACTCCTCACGCAAGGACAAGAAGTCGTCTATATGGAACTGGAAAGCATCATTCAGAGCCCTCTCCG GTGTTAAGAACCGCAAGTTCAATTGTTGTTTCTCTCTTCAAGTTCATTCAATCGAAGGCCTTCCCTCGACTTTGGACGGTTGCAGCTTGTGGGTAAATTG GAAGTGGAGGGATGGGGAGTTGGTGACACGCCCTGTGAAATCTTTTGAAGGGACTGCAGAGTTTGAAGATAAGTTAGTGCATACTTGTCTTGTTTATGGC AGTCGGAATGGTCCTCACCATTCTGCAAAGTATGAGGCTAAACATTTCACGCTCTTTGCATCTATCTTTCGTATGCCTGAGGTTGATTTGGGGAAGCACA GGGTTGACCTTACTAGGTTGCTTCCTCTCACATTGGAGGAATTGTATGATGAGAAGAGTTCAGGAAAGTGGACTACTAGTTATAAGTTGTCAGGAGAAGC AAAGGGTGCAGTAATGAATGTGAGTTTCGGTTATACAGTTGTTGGAGAGTCTCTGACTGGAAATGGTCACAATGTTCCCGAGGAAGTAAGTATCAAAAGG AATAATCTGAAAACAGCTAAGACAATGCCTAGACTTGGCCAATCTGAAGGAAAGGTTGCATTACGTCGTCATGAAAGTCTTACCAATACTTCTAACAAGC AGTTTCCTGCAAAGCCTCAGCCGGTGGAAATGGAAGAAGATCTTCATGAAGTTATGGCTGACAAAAATCTAGAACTGGATGCGACAAGAAACATGATGAA TGGGAGATTTGATGTCGATAAGTTGGATGCTTCAACAAGTGAAAATGAGCATGATGATAAGCTGCAGTTTCCAACCATATCTGAATCTGGGGAAACCAAT GTTGAAAATGAAAATGGGAATGTTGAATTTTCTATTCCTGAAGAAGGGAAGGATTTGCTAAATGAGAGCAACGAAGATGGGAATGTTGAATTTTCTATTG CTGAAGAAGCAAAGGTTTTGCCAAGTGAGAGCAGTAGAACGGAGAACCTTACCCTCAAGTATGCTGGCGTTTCTATAGTAGAGACTGATATTGCTTCCAA TTTTCAGGCAATTCATCAAGAGTCTATTAATTGTCAGGCTGGGGAAAAAGGAGATACTGGTAAAAAAGAGCATCTTTTTACCTGTAACTCTGACTCTGAT GATAATCAATGTTCAAAAGAATATGTGATGAAAGAATTAGAATCTATGTTAAACAGTGTTTCAAATCTTGAAACTGAAGCACTTGATTTTTCTGATGAAC TGAAAATTGACAATCTAGTAGACAGGGACGAAAGCATAGTTAACCTGGACGATGCTCATTCTATTGCAACTGAATTTTTAGACATGTTGGGGGTTCAGCA TAGTCCATTTGGCTTGAGTTCTGAGAGTGAACCTGAGTCCCCAAGGGAGCAGTTACTAAGGCAGTTTGAGAAGGATGCCTTGGCTGGTGGCTTTTCTTTG TTTGACTATAACGCAGATGATGGGGATGATTCGGCGAGTACAAATAATGAGATGAAGGAGTCAGGATATGACCAATGGGTAGGTGGTTTTGATCTGCCAG CATTCACGGATGATGCAGAAGAAGACCATCATAAAGAAACTCACTCCCGGGGTAAAAAGATTGGAGCTAAGATGTTGGAGGACTTTGAGACAGAGGTTTT AATGCATGAATGGGGCTTGAATGACAAGACATTTGAGTGTTCTCCATCCAAGACTTGTGATGGCATTGGGGTTCAATGTGATCCATCTGTTGATGAGCTG TATAAATTACCACCACTTTCAGAAGGTTTAGGTCCTTTTCTGCAGACAAAGAATGGTGGTTTTGTACGTTCTATGAATCCGTCACTTTTTGGGAGTGCCA AAAGTGGTGGGAGCTTGATTATGCAAGTCTCCAGTCCTGTTGTGGTACCTGCAGAAATGGGCGCTAGTGTTACTGATGTACTTGAGCAACTAGCTTCAGT TGGAATTGAAAAGCTCTCTATGCAGGCAAATAAGCTAATGCCTTTGGAGGATATCACTGGGAAAACAATGCAACAGATTGCTTGGGAAGTTGCTGGTGCT TTAGAGGGACATGATGGGGGGAGTTCTTTCCGGCAGAAACATGAGTTAGGGCATGAGGGATCAGATATGCCAGAGAGGACGAAGAAAAAGAGTTCTAGCT CAACAGGAACTGAGATTGGCTCGGAATATGTGTCTCTCGATGACCTTGCACCATTAGCTATGGATAAGATTGAAGCTCTTTCATTGGAGGGTTTGAGAAT ACAGTCTGGGCTGTCTGGCGAGGAAGCAACCGTAGGGGAAATTTCAAGTCTCCATGGCAAAGGAGTTAATGTTGGGAGTTCCCTTGGGTTGGAAAGAACT GCTGGAATGCAGTTGTTGGACATTAAAGACAATGATGGTGACATTGACGGATTAATGGGTCTTTCGTTGACTCTTGACGAATGGATGCGGCTGGATTCTG GTGATATTGGTGATGACGATCAAATAAGTGAACGGACTTCAAAGATACTTGCTGCTCATCATGCCAGCTCCTTGGAAATGCTGCAAGGGAGGTCGAAGGG AGAGAAAAGGCGTGGAAAAGGATCCGGTAAAAAATGTGGTTTGCTGGGTAACAACTTTACAGTAGCATTAATGGTTCAACTACGCGATCCTTTCAGAAAC TACGAGCCTGTCGGGACGCCAATGCTTGCTCTGATTCAAGTTGAGCGAGTTTTCATCCCACCGAAGCCCAGAATATACTGCAAAGTGGCAGAGTTGAGGG AGAGCAGCAACAATGATGATGAAGAAGAGTCCGAGTTGACATCAAAGGAGGCAAAGGACAGGAGAGTAGTAGAAGAAGATAATAAAGCAGAAGACATGGA AGGAATAGCGCGGTTCCAAATTGCGGAAGTACATGTTGCTGGTATAAAGACCGAACCTGAGAAGAAGGTTTGGGGTACGGCAACACAGCAACAAGCTGGT TCTCGTTGGCTGGTAGCTAATGGAATGGGAAAGGGGAATAAAATGAAGTCAAAAGCTGGAAGCTCTGGTGATAGTGTGTGGAGTTTATCATCATCTCGTG TTCAGCAACTGGGAGGAGGGAAGCAGATTAAGAGGAACCCAAATGTAGTTTTGCCTAGTAAGAAACTGAATAGCTGGTTGAAGTAA
AA sequence Show only first row Show all	>Lus10021568 pacid=23182140 polypeptide=Lus10021568 locus=Lus10021568.g ID=Lus10021568.BGIv1.0 annot-version=v1.0 MSRVEHGKKTRDDESVENNLLLNDLQSISKALNLDKQNPSSTLLPTASREDPGEEKLLLNELQTISKALYLDRPKPSRTLLPTASSRAKASGRSPTVVEP KTKPKTVPVNDDSSRKDKKSSIWNWKASFRALSGVKNRKFNCCFSLQVHSIEGLPSTLDGCSLWVNWKWRDGELVTRPVKSFEGTAEFEDKLVHTCLVYG SRNGPHHSAKYEAKHFTLFASIFRMPEVDLGKHRVDLTRLLPLTLEELYDEKSSGKWTTSYKLSGEAKGAVMNVSFGYTVVGESLTGNGHNVPEEVSIKR NNLKTAKTMPRLGQSEGKVALRRHESLTNTSNKQFPAKPQPVEMEEDLHEVMADKNLELDATRNMMNGRFDVDKLDASTSENEHDDKLQFPTISESGETN VENENGNVEFSIPEEGKDLLNESNEDGNVEFSIAEEAKVLPSESSRTENLTLKYAGVSIVETDIASNFQAIHQESINCQAGEKGDTGKKEHLFTCNSDSD DNQCSKEYVMKELESMLNSVSNLETEALDFSDELKIDNLVDRDESIVNLDDAHSIATEFLDMLGVQHSPFGLSSESEPESPREQLLRQFEKDALAGGFSL FDYNADDGDDSASTNNEMKESGYDQWVGGFDLPAFTDDAEEDHHKETHSRGKKIGAKMLEDFETEVLMHEWGLNDKTFECSPSKTCDGIGVQCDPSVDEL YKLPPLSEGLGPFLQTKNGGFVRSMNPSLFGSAKSGGSLIMQVSSPVVVPAEMGASVTDVLEQLASVGIEKLSMQANKLMPLEDITGKTMQQIAWEVAGA LEGHDGGSSFRQKHELGHEGSDMPERTKKKSSSSTGTEIGSEYVSLDDLAPLAMDKIEALSLEGLRIQSGLSGEEATVGEISSLHGKGVNVGSSLGLERT AGMQLLDIKDNDGDIDGLMGLSLTLDEWMRLDSGDIGDDDQISERTSKILAAHHASSLEMLQGRSKGEKRRGKGSGKKCGLLGNNFTVALMVQLRDPFRN YEPVGTPMLALIQVERVFIPPKPRIYCKVAELRESSNNDDEEESELTSKEAKDRRVVEEDNKAEDMEGIARFQIAEVHVAGIKTEPEKKVWGTATQQQAG SRWLVANGMGKGNKMKSKAGSSGDSVWSLSSSRVQQLGGGKQIKRNPNVVLPSKKLNSWLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20610			unknown protein		Lus10021568 [exp]	0	1
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10037495 [exp]	5.2	0.7424
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	6.0	0.7577
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10006587 [exp]	11.5	0.7512
AT5G42670			Agenet domain-containing prote...		Lus10011444 [exp]	30.2	0.6878
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	67.5	0.6499
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	74.3	0.6522
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Lus10010053 [exp]	100.6	0.6343
AT2G39130			Transmembrane amino acid trans...		Lus10037974 [exp]	113.4	0.5990
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	127.9	0.6245
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10018549 [exp]	156.9	0.6087

Compare expression of checked genes

Lus10021568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.