Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35460 522 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017161 [exp] 634 / 0 AT5G35460 610 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G051100 [exp] 541 / 0 AT5G35460 590 / 0.0 unknown protein Potri.006G145600 [exp] 527 / 0 AT5G35460 536 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10998 [flax] [poplar] DUF2838 Protein of unknown function (DUF2838)
Representative CDS sequence Show only first row Show all	>Lus10021569 pacid=23182088 polypeptide=Lus10021569 locus=Lus10021569.g ID=Lus10021569.BGIv1.0 annot-version=v1.0 ATGCTATCGAAACAGGCAAATCAAACCAAGCAGAAGATCGCCAAGCAAGCCGTCAAGATCGCCAAACAAGCTGAGGAGCACGAAAGGTTCATCAATAAGG TGACCCATTTTGTTGGGGTGTTTGGATTCGGAGGATTCTGCTATCTCTTGGGCGCCAGGCCTCAGGATATTCCATACGTGTATTGCTTGTTCTATGTCAT ATTCGTACCTCTTCGATGGATCTACTACCGTTTCAAGAAATGGCACTATTATCTTCTGGATTTCTGCTACTATGCAAACACAATCTTCTTGGTCAACCTC CTTCTGTACCCGAAGAACGAGAAGTTCTTCATGGTTTGCTTTTCATTTGCAGAAGGGCCATTGGCGTGGGCGTTGATAGTTTGGAGATGTAGTTTGGTTT TTAACTCTCTAGACAAACTTGTTAGCGTGCTTATACACCTCTTGCCAGGGTTGGTTTTCTTCACGATTCGGTGGTGGAATCCAGCAACGTTTGAAGCAAT GCATCCTGAAGGAACAGCTCGCAGGATGTCGTGGCCATACAAAGTAGAAGGGAAATCCTTCCTTTTCAATTGGCTATTTTGGGTACCTCTAGCTGCTTAC ACACTCTGGCAGTTTCTGTATTTTCTGATTGTCAATGTCCTTCGGCGTCAGCGATTATTGAGAGATCCAGAAGTCATGACATCCTACAGGGAGCTGTCAA AGAAGGCAAGGAAAGCAAACAACGTATGGTGGAGGTTAAGCGGGGTGCTTGGGGATCAGAACCGGATGCTGATGTACATTGTATTCCAAGGGATATTCAC AGTTGCAACCATGGCTCTGACAGTGCCCATATTTTTGTCATACAGACTGCATGTGGTGTTCCAATTACTGAAAGTTTCAGCAGCTGTTTGGAACGGTGGG AGCTTCCTCCTGGAAGTAATGCCTAGGCAGGTGATTCTCAAGGAGAAGAAAAAAACAGAAATGAAACCACTAGTACCAGCTGCTGAAGAACAAGACGACG TAGCTTCAACCCCCTTGGCGGAGGAAAGCAGCGAGGTGTTGCTGTCCGAGTAG
AA sequence Show only first row Show all	>Lus10021569 pacid=23182088 polypeptide=Lus10021569 locus=Lus10021569.g ID=Lus10021569.BGIv1.0 annot-version=v1.0 MLSKQANQTKQKIAKQAVKIAKQAEEHERFINKVTHFVGVFGFGGFCYLLGARPQDIPYVYCLFYVIFVPLRWIYYRFKKWHYYLLDFCYYANTIFLVNL LLYPKNEKFFMVCFSFAEGPLAWALIVWRCSLVFNSLDKLVSVLIHLLPGLVFFTIRWWNPATFEAMHPEGTARRMSWPYKVEGKSFLFNWLFWVPLAAY TLWQFLYFLIVNVLRRQRLLRDPEVMTSYRELSKKARKANNVWWRLSGVLGDQNRMLMYIVFQGIFTVATMALTVPIFLSYRLHVVFQLLKVSAAVWNGG SFLLEVMPRQVILKEKKKTEMKPLVPAAEEQDDVASTPLAEESSEVLLSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35460			unknown protein		Lus10021569 [exp]	0	1
AT2G23790			Protein of unknown function (D...		Lus10019663 [exp]	3.2	0.8878
AT3G03890			FMN binding (.1.2)		Lus10013617 [exp]	3.3	0.8697
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	4.0	0.8782
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018287 [exp]	4.2	0.8802
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	4.2	0.8906
AT5G38895			RING/U-box superfamily protein...		Lus10005084 [exp]	5.3	0.8794
AT5G39250			F-box family protein (.1)		Lus10032969 [exp]	7.5	0.8607
AT1G31940			unknown protein		Lus10012117 [exp]	8.4	0.8850
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	8.9	0.8851
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	10.7	0.8866

Compare expression of checked genes

Lus10021569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.