Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57040 162 / 3e-51 Lactoylglutathione lyase / glyoxalase I family protein (.1) AT1G80160 49 / 9e-08 GLYI7 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT2G28420 48 / 3e-07 GLYI8 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) AT1G15380 47 / 9e-07 GLYI4 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017158 [exp] 174 / 1e-55 AT5G57040 254 / 7e-87 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10021574 [exp] 47 / 9e-08 AT5G57040 132 / 6e-41 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10014480 [exp] 43 / 2e-05 AT1G80160 244 / 1e-83 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10030070 [exp] 43 / 2e-05 AT1G80160 247 / 7e-85 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10039579 [exp] 43 / 2e-05 AT2G28420 248 / 2e-84 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10005324 [exp] 42 / 9e-05 AT2G28420 245 / 2e-83 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G056200 [exp] 140 / 1e-42 AT5G57040 253 / 2e-86 Lactoylglutathione lyase / glyoxalase I family protein (.1) Potri.007G129200 [exp] 46 / 1e-06 AT1G80160 225 / 1e-76 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.003G062400 [exp] 44 / 6e-06 AT1G80160 261 / 2e-90 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.009G055500 [exp] 43 / 3e-05 AT2G28420 229 / 1e-77 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Potri.001G171600 [exp] 42 / 3e-05 AT1G80160 270 / 6e-94 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.007G015100 [exp] 40 / 0.0002 AT1G15380 167 / 7e-53 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.005G117000 [exp] 40 / 0.0002 AT1G80160 166 / 2e-52 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.003G009000 [exp] 39 / 0.0005 AT1G80160 190 / 8e-62 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF00903 [flax] [poplar] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10021573 pacid=23182123 polypeptide=Lus10021573 locus=Lus10021573.g ID=Lus10021573.BGIv1.0 annot-version=v1.0 ATGGCTATGGAAGATAAAGAAATGGAGATTTTGAAAGGGGACCTAAGTAAGTTAACACCAAGGAAGAGGAAGGTTCTTAAAAAGCGTCATGATGCAATAT ATGTTAGGGGTAATTGTAGCAGTACTGCTAGTAGTGGCATTCGAGGTAACAATGAGTCCGATCAAGATGGCGATGGGTGCATCCCATGCAGAGCAGATTA TGGAGTTGTTGGAGTTCACCATGTCGGAATCCTGTGTGAGAATCTGGAGAAGTCGCTTGAATTCTATCAAGGAATGTTAGGGCTTGAAATAAACGAGGAA AGGCCTCACGATAAGCTTCCATATAGAGGTGCTTGGTTGTGGGTGGGTGCTGAGATGATCCATCTGATGGAGCTTCCCAATCCAGACCCCTTAACCGGAC GCCCCCAACATGGCGGCCGCGATCGCCCTGCCCCCCGCGCCACTCCCCTCCATATAGAGGTGCTTGGTTGTGGGTGGGTGCTGAGATGA
AA sequence Show only first row Show all	>Lus10021573 pacid=23182123 polypeptide=Lus10021573 locus=Lus10021573.g ID=Lus10021573.BGIv1.0 annot-version=v1.0 MAMEDKEMEILKGDLSKLTPRKRKVLKKRHDAIYVRGNCSSTASSGIRGNNESDQDGDGCIPCRADYGVVGVHHVGILCENLEKSLEFYQGMLGLEINEE RPHDKLPYRGAWLWVGAEMIHLMELPNPDPLTGRPQHGGRDRPAPRATPLHIEVLGCGWVLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021573 [exp]	0	1
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021574 [exp]	1.4	0.9353
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10013466 [exp]	4.6	0.8920
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10042274 [exp]	5.1	0.8926
AT2G34460			NAD(P)-binding Rossmann-fold s...		Lus10040884 [exp]	7.4	0.8442
AT1G64850			Calcium-binding EF hand family...		Lus10013613 [exp]	10.6	0.8196
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10026429 [exp]	13.0	0.8421
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10028811 [exp]	14.2	0.8546
AT1G52190			Major facilitator superfamily ...		Lus10038616 [exp]	16.9	0.8701
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10000593 [exp]	19.4	0.8764
AT1G22750			unknown protein		Lus10028718 [exp]	20.7	0.8458

Compare expression of checked genes

Lus10021573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.