Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66240 540 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT5G14530 325 / 2e-110 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 90 / 3e-20 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 70 / 2e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 70 / 4e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 68 / 3e-12 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT4G02730 67 / 3e-12 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 63 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 61 / 4e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G73720 59 / 2e-09 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017157 [exp] 680 / 0 AT5G66240 541 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10014558 [exp] 342 / 3e-117 AT5G14530 552 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032128 [exp] 159 / 2e-47 AT5G14530 260 / 8e-87 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 86 / 8e-19 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 82 / 2e-17 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 72 / 4e-14 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 71 / 1e-13 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 71 / 1e-13 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 69 / 6e-13 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114600 [exp] 622 / 0 AT5G66240 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.001G345900 [exp] 333 / 7e-114 AT5G14530 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.017G071900 [exp] 328 / 5e-112 AT5G14530 558 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 89 / 5e-20 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 85 / 1e-18 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 67 / 2e-12 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 65 / 1e-11 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 64 / 4e-11 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 62 / 2e-10 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 59 / 2e-09 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10021575 pacid=23182116 polypeptide=Lus10021575 locus=Lus10021575.g ID=Lus10021575.BGIv1.0 annot-version=v1.0 ATGGAAGGGACGCAATCGGGAAGAGGAGATGAGAAAGTGTCACTGGAGCTCACAGAAGAGATTCTTCAGAGCATGGAAACCGGCATGGTTTTCAGAGACT ACAGTGGTATAATCAGTTCAATGGACTTCCACAAGCCGTCCAGCTACTTGGTGACTGCTAGCGATGATGAATCTATTCGCCTTTATGATGTTGCCACTGC TACATGTTTGAAGACGATTAATAGCAAAAAGTACGGCGTTGATCTGGTTTCCTTCACTTCTCATCCTACAACGGTCTTATATTCTTCGAAAAATGGATGG GACGAATCTCTTCGGCTCCTCTCCTTGAATGATAACAAGTATTTGCGTTATTTTAAGGGGCACCATGACAGGGTTGTTTCACTAAGTTTTTGTGCTCGCA AAGACTGTTTCATTTCTGGTTCTTTGGATCGAACTGTTTTGCTCTGGGATCAGCGAGCTGAAAAGTGTCAGGGCCTTTTGCGCGTCCAAGGAAGGCCTGC ATCAGCATATGATGATCAGGGACTAGTTTTCGCCATTGCTTTCGGAGGATACATAAGAATGTTTGATTCTCGTAAATATGAAAAGGGTCCTTTCGAGATT TATTCTGTGGGGGGAGATATCTCGGATGCAAATGCTGTAAAGTTTAGCAATGATGGCAGACTAATGCTTCTGACAACTATGGATGGACATATTCATGTAG TTGATTCATTCCGTGGAACATTGCTATGCACCTACAACGTGAAACCAGTTTCAAGCAATTCCACACTGGAAGCATCTTTCAGCCCTGACGGAATGTATGT TATATCAGGCTCAGGGGATGGTAGTCTCCATGCTTGGAGCATAAGGACCGGGAAGGAGGTAGCTAGTTGGATGACTTATGAAACAGAACCTCACGTCATA AAATGGGCTCCTGGGACTCTTATGTTTGCAACTGGGTCTTCAGAACTGTCATTTTGGGTTCCGGATTTGTCAAAGTTGGCAGCTTATGTTGGAAGAAAGT AG
AA sequence Show only first row Show all	>Lus10021575 pacid=23182116 polypeptide=Lus10021575 locus=Lus10021575.g ID=Lus10021575.BGIv1.0 annot-version=v1.0 MEGTQSGRGDEKVSLELTEEILQSMETGMVFRDYSGIISSMDFHKPSSYLVTASDDESIRLYDVATATCLKTINSKKYGVDLVSFTSHPTTVLYSSKNGW DESLRLLSLNDNKYLRYFKGHHDRVVSLSFCARKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPASAYDDQGLVFAIAFGGYIRMFDSRKYEKGPFEI YSVGGDISDANAVKFSNDGRLMLLTTMDGHIHVVDSFRGTLLCTYNVKPVSSNSTLEASFSPDGMYVISGSGDGSLHAWSIRTGKEVASWMTYETEPHVI KWAPGTLMFATGSSELSFWVPDLSKLAAYVGRK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66240			Transducin/WD40 repeat-like su...		Lus10021575 [exp]	0	1
AT2G14255			Ankyrin repeat family protein ...		Lus10040833 [exp]	9.4	0.8981
AT2G30105			unknown protein		Lus10031861 [exp]	10.1	0.8982
AT5G12230		MED19A	unknown protein		Lus10028832 [exp]	13.2	0.8907
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	14.9	0.8929
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023021 [exp]	18.8	0.8611
AT5G02520			unknown protein		Lus10025814 [exp]	18.8	0.8756
AT5G04910			unknown protein		Lus10028878 [exp]	19.0	0.8683
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	19.9	0.8908
					Lus10039025 [exp]	20.3	0.8809
AT1G04590		EMB2748	unknown protein		Lus10019008 [exp]	21.7	0.8782

Compare expression of checked genes

Lus10021575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.