Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57020 752 / 0 ATNMT1, NMT1 ARABIDOPSIS THALIANA MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE, myristoyl-CoA:protein N-myristoyltransferase (.1) AT2G44175 81 / 1e-18 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017156 [exp] 526 / 2e-176 AT5G57030 801 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G066200 [exp] 796 / 0 AT5G57020 784 / 0.0 ARABIDOPSIS THALIANA MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE, myristoyl-CoA:protein N-myristoyltransferase (.1) Potri.006G147500 [exp] 793 / 0 AT5G57020 780 / 0.0 ARABIDOPSIS THALIANA MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE, myristoyl-CoA:protein N-myristoyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF02799 [flax] [poplar] NMT_C Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain CL0257 [flax] [poplar] Acetyltrans PF01233 [flax] [poplar] NMT Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021577 pacid=23182134 polypeptide=Lus10021577 locus=Lus10021577.g ID=Lus10021577.BGIv1.0 annot-version=v1.0 ATGGGTGATAACACCGATCATTCCTCTCCTGGGGAAAACCCAGATCATGAGTCTGTGGCTCAACCTGTTGAATCTCAGGAAGACAGCTCTATGGAAACCA TTGTTCGTAAAATTCAAGATTCCATGTCCTTGGGGAAGCAACACAAGTTTTGGGAAACCCAACCAGTGGGTCAATTCAAGGATGTTGGGGATACGAGTTT GCCTGAAGGACCTATTGAGCCTCCAACCCCATTGTCTGAGGTGAAACAAGAGCCTTACAATCTACCTGCTCAGTACGAATGGACTACTTGCGACATGGAA TCTGAGGAGACCTGTAATGAGGTCTATGCATTGTTGAAGAACAACTATGTCGAGGATGATGAGAACATGTTTAGGTTCAATTACTCCAAGGAGTTCCTCA GTTGGGCATTGCGTCCCCCTGGCTATTACAAGAGCTGGCACATTGGTGTGCGTGCTAAGGCTTCCAAGAAACTTGTTGCTTTCATAACCGGTATCCCAGC AAGGATTAGGGTTCGTGATGAAATTGTGAAAATGGCTGAGGTCAACTTTCTGTGCGTTCATAAGAAACTTAGGACCAAGAGACTTGCACCAGTAATGATC AAAGAGGTTACTAGGAGGGTTCATTTGGAGAATATTTGGCAAGCAGCATATACAGCTGGTGTGGTTTTACCAACTCCAGTAACCACTGCTCAATATTGGC ACAGGTCCTTGAACCCCAAGAAGCTTATTGATGTTGGCTTCTCCAGGCTTGGTGCAAGGATGACAATGAGCCGAACAATAAAACTGTACAAGCTCCCCGA TTCACCAGCTACACCTGGACTCCGGAAAATGGAGCTTCATGATGTGCCTGCTGTTACACGGTTGCTTAGGAGCTACTTGGCTCAGTTTGCTGTTGCACCT GATTTTGACGAGGACGATGTTGAGCATTGGCTTCGTCCTGTGGAGAATGTCATTGATAGTTTTGTGGTTGAGAGCCCCGAGACCCATGAGATCACCGACT TCTGCAGCTTTTACACCCTACCATCATCTATCCTAGGTAACCAGAACTACTCCAATCTGAAAGCTGCTTATTCGTATTACAATGTTGCTACCAAAACCCC GCTGCTACAGTTGATGAACGATGCACTGATTGTTGCGAAGCAGAAGGATTTTGATGTTTTTAATGCCTTGGATGTGATGTTCAATGAGTCGTTTGTGAAG GAGCTGAAATTTGGGCCAGGTGATGGACAGCTTCACTACTATCTTTACAACTACCGTTTGAAGCAAGCACTCAGACCATCTGAGCTTGGTCTTGTTCTCT TGTAG
AA sequence Show only first row Show all	>Lus10021577 pacid=23182134 polypeptide=Lus10021577 locus=Lus10021577.g ID=Lus10021577.BGIv1.0 annot-version=v1.0 MGDNTDHSSPGENPDHESVAQPVESQEDSSMETIVRKIQDSMSLGKQHKFWETQPVGQFKDVGDTSLPEGPIEPPTPLSEVKQEPYNLPAQYEWTTCDME SEETCNEVYALLKNNYVEDDENMFRFNYSKEFLSWALRPPGYYKSWHIGVRAKASKKLVAFITGIPARIRVRDEIVKMAEVNFLCVHKKLRTKRLAPVMI KEVTRRVHLENIWQAAYTAGVVLPTPVTTAQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPDSPATPGLRKMELHDVPAVTRLLRSYLAQFAVAP DFDEDDVEHWLRPVENVIDSFVVESPETHEITDFCSFYTLPSSILGNQNYSNLKAAYSYYNVATKTPLLQLMNDALIVAKQKDFDVFNALDVMFNESFVK ELKFGPGDGQLHYYLYNYRLKQALRPSELGLVLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57020		ATNMT1, NMT1	ARABIDOPSIS THALIANA MYRISTOYL...		Lus10021577 [exp]	0	1
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10016850 [exp]	4.1	0.8094
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10028885 [exp]	6.9	0.7512
AT4G19006			Proteasome component (PCI) dom...		Lus10010423 [exp]	11.8	0.7813
AT5G07900			Mitochondrial transcription te...		Lus10008688 [exp]	12.2	0.7205
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Lus10043181 [exp]	18.5	0.6536
AT2G35790			unknown protein		Lus10023498 [exp]	19.0	0.7362
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	23.5	0.7444
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10008670 [exp]	23.7	0.7510
AT3G57990			unknown protein		Lus10021042 [exp]	30.9	0.6582
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010891 [exp]	33.5	0.7283

Compare expression of checked genes

Lus10021577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.