Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57015 265 / 2e-87 CKL12 casein kinase I-like 12 (.1) AT4G26100 262 / 3e-86 CKL1, CK1 casein kinase 1 (.1) AT1G72710 255 / 3e-83 CKL2 casein kinase 1-like protein 2 (.1) AT2G19470 238 / 4e-77 CKL5 casein kinase I-like 5 (.1) AT5G44100 224 / 2e-71 CKL7 casein kinase I-like 7 (.1) AT3G23340 221 / 2e-70 CKL10 casein kinase I-like 10 (.1) AT1G03930 221 / 7e-70 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT4G28540 219 / 5e-69 CKL6, PAPK1 casein kinase I-like 6 (.1) AT4G08800 206 / 2e-66 Protein kinase superfamily protein (.1) AT4G14340 211 / 3e-66 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027628 [exp] 265 / 6e-87 AT4G26100 702 / 0.0 casein kinase 1 (.1) Lus10006879 [exp] 259 / 6e-85 AT1G72710 664 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006018 [exp] 258 / 7e-85 AT1G72710 649 / 0.0 casein kinase 1-like protein 2 (.1) Lus10037621 [exp] 258 / 8e-85 AT1G72710 655 / 0.0 casein kinase 1-like protein 2 (.1) Lus10011940 [exp] 256 / 2e-83 AT4G26100 680 / 0.0 casein kinase 1 (.1) Lus10022908 [exp] 225 / 1e-71 AT4G28540 625 / 0.0 casein kinase I-like 6 (.1) Lus10033913 [exp] 223 / 5e-71 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10022029 [exp] 219 / 3e-69 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10042570 [exp] 219 / 4e-69 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G147800 [exp] 270 / 5e-89 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 269 / 1e-88 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 265 / 4e-87 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 261 / 1e-85 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.005G226900 [exp] 227 / 1e-72 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.002G036000 [exp] 227 / 1e-72 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.018G041000 [exp] 221 / 2e-70 AT4G28880 589 / 0.0 casein kinase I-like 3 (.1) Potri.013G047200 [exp] 218 / 8e-69 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.010G070400 [exp] 216 / 2e-68 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.008G168100 [exp] 216 / 5e-68 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021580 pacid=23182091 polypeptide=Lus10021580 locus=Lus10021580.g ID=Lus10021580.BGIv1.0 annot-version=v1.0 ATGGAACCTCGTGTTGGCAATAAGTTTCGCCTCGGTCGTAAAATCGGTAGCGGTTCATTCGGAGAGATCTATCTTGGCTTGTTTTTAACCTTCCTCTTCA CTTCTGCTTTGCTGTTGCATCTTTCAACTTTGGCGTTTGTATACGCCATTGACTTTGGTTTGGCAAAGAAATATCGGGATAACTCAACTCATCAGCACAT TCCATACAGGGAAAACAAAAATTTGACTGGCACTGCTAGATATGCAAGCATGAATACTCAACTAGGAATTGAGCAAAGCAGAAGGGATAATCTAGAGTCT CTTGTTCTCCTACTGATTCGTCACTGTCCTTGTACCCTTCCTTGGCAAGGACTAAAAGCAGGAACTAAGAAACAAAAGTATGAGAAAATCAATGAAAAGA AAGTTTCTAATTCAATTGAGGCTTTGTGTCGTGGAAACCTAAGTGAATTCGCCTCCTACTTTCATTACTGTCGTTCATTATGGTTTGATGATAAGCCAGA TTATGCATATCTGAAGAGAATATTTCACGATCTCTTCATTCTTGAAGGCTTCCAGTTTGATTATGTGTTTGATTGGACAATACTGAAGTATCAGCAATCG CAGCTAGCTAATCCTCCAGCACGAGGCCATTTAAGTCTTGGTGTAGGATCTCATTTATGTTAG
AA sequence Show only first row Show all	>Lus10021580 pacid=23182091 polypeptide=Lus10021580 locus=Lus10021580.g ID=Lus10021580.BGIv1.0 annot-version=v1.0 MEPRVGNKFRLGRKIGSGSFGEIYLGLFLTFLFTSALLLHLSTLAFVYAIDFGLAKKYRDNSTHQHIPYRENKNLTGTARYASMNTQLGIEQSRRDNLES LVLLLIRHCPCTLPWQGLKAGTKKQKYEKINEKKVSNSIEALCRGNLSEFASYFHYCRSLWFDDKPDYAYLKRIFHDLFILEGFQFDYVFDWTILKYQQS QLANPPARGHLSLGVGSHLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10021580 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10018937 [exp]	2.8	0.9292
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	3.5	0.9400
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	3.9	0.9244
AT2G34930			disease resistance family prot...		Lus10002755 [exp]	5.7	0.9110
AT1G08110			lactoylglutathione lyase famil...		Lus10016138 [exp]	6.2	0.9393
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10027932 [exp]	6.9	0.9231
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	9.6	0.9307
AT2G43210			Ubiquitin-like superfamily pro...		Lus10026718 [exp]	13.0	0.8966
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10013996 [exp]	14.3	0.8847
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10042724 [exp]	17.2	0.9126

Compare expression of checked genes

Lus10021580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.