Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11970 91 / 1e-24 Protein of unknown function (DUF3511) (.1) AT2G19460 74 / 5e-18 Protein of unknown function (DUF3511) (.1) AT1G72720 69 / 4e-16 Protein of unknown function (DUF3511) (.1) AT3G62640 65 / 1e-14 Protein of unknown function (DUF3511) (.1) AT2G47480 62 / 2e-13 Protein of unknown function (DUF3511) (.1) AT3G13910 61 / 3e-13 Protein of unknown function (DUF3511) (.1) AT3G05725 55 / 1e-10 Protein of unknown function (DUF3511) (.1) AT4G09890 51 / 3e-09 Protein of unknown function (DUF3511) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017155 [exp] 166 / 3e-54 AT5G11970 93 / 1e-25 Protein of unknown function (DUF3511) (.1) Lus10027629 [exp] 130 / 5e-40 AT2G19460 110 / 2e-32 Protein of unknown function (DUF3511) (.1) Lus10011939 [exp] 122 / 5e-37 AT2G19460 109 / 6e-32 Protein of unknown function (DUF3511) (.1) Lus10008471 [exp] 78 / 1e-19 AT2G19460 95 / 1e-26 Protein of unknown function (DUF3511) (.1) Lus10006019 [exp] 75 / 2e-18 AT2G19460 88 / 9e-24 Protein of unknown function (DUF3511) (.1) Lus10031405 [exp] 56 / 3e-11 AT3G05725 71 / 6e-17 Protein of unknown function (DUF3511) (.1) Lus10010929 [exp] 56 / 7e-11 AT3G05725 71 / 3e-17 Protein of unknown function (DUF3511) (.1) Lus10028690 [exp] 50 / 5e-09 AT4G09890 71 / 1e-17 Protein of unknown function (DUF3511) (.1) Lus10020842 [exp] 50 / 9e-09 AT4G09890 69 / 2e-16 Protein of unknown function (DUF3511) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G147700 [exp] 86 / 2e-22 AT2G19460 96 / 2e-26 Protein of unknown function (DUF3511) (.1) Potri.006G225900 [exp] 83 / 2e-21 AT5G11970 90 / 2e-24 Protein of unknown function (DUF3511) (.1) Potri.001G197700 [exp] 81 / 2e-20 AT2G19460 78 / 1e-19 Protein of unknown function (DUF3511) (.1) Potri.003G043600 [exp] 76 / 1e-18 AT5G11970 89 / 5e-24 Protein of unknown function (DUF3511) (.1) Potri.002G065200 [exp] 61 / 2e-13 AT4G09890 84 / 9e-23 Protein of unknown function (DUF3511) (.1) Potri.014G123600 [exp] 62 / 3e-13 AT2G47480 93 / 5e-26 Protein of unknown function (DUF3511) (.1) Potri.005G195800 [exp] 61 / 3e-13 AT4G09890 81 / 1e-21 Protein of unknown function (DUF3511) (.1) Potri.005G019900 [exp] 54 / 1e-10 AT3G05725 63 / 3e-14 Protein of unknown function (DUF3511) (.1) Potri.010G140800 [exp] 50 / 3e-09 AT2G47480 62 / 2e-14 Protein of unknown function (DUF3511) (.1) Potri.007G077500 [exp] 50 / 4e-09 AT4G09890 80 / 3e-21 Protein of unknown function (DUF3511) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12023 [flax] [poplar] DUF3511 Domain of unknown function (DUF3511)
Representative CDS sequence Show only first row Show all	>Lus10021581 pacid=23182132 polypeptide=Lus10021581 locus=Lus10021581.g ID=Lus10021581.BGIv1.0 annot-version=v1.0 ATGGAAGACTTGAGATCCAAATCCGATAATCGATCCTCCCAACTAGACCTCTACCAATACGGCCCAGCAGCTGGAGGTATGCAAGATCTCCGATGCTACA GCGCGTCGTATGCAACAGCAGCAGCATCTTCCGTGTATCCATCTCAGAACAGCAGGCAACTGGAGATGAGTAGTAGTAGTAGTAGTAGCAAGGAGGATCC TAATAAGTTGAAGAAAGGAAAGTCGATCAAGGGGTGGACGTTGAGTGACCCAGAGTTGCAGCGCAAGAAACGGGTTGCGAGCTACAAGGCGTACACAGTG GAAGGGAAAGTCAAAGGTTCGTTCAAAAAGAGCTTCCGCTGGCTCAAGGACCGATACTCCAGAGTCGTCTATGGATGGTGGTAG
AA sequence Show only first row Show all	>Lus10021581 pacid=23182132 polypeptide=Lus10021581 locus=Lus10021581.g ID=Lus10021581.BGIv1.0 annot-version=v1.0 MEDLRSKSDNRSSQLDLYQYGPAAGGMQDLRCYSASYATAAASSVYPSQNSRQLEMSSSSSSSKEDPNKLKKGKSIKGWTLSDPELQRKKRVASYKAYTV EGKVKGSFKKSFRWLKDRYSRVVYGWW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11970			Protein of unknown function (D...		Lus10021581 [exp]	0	1
AT1G16810			unknown protein		Lus10034837 [exp]	2.0	0.9142
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10001237 [exp]	3.5	0.9097
AT1G15270			Translation machinery associat...		Lus10037543 [exp]	4.2	0.9053
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10002228 [exp]	6.9	0.8961
AT3G22480		PDF2	prefoldin 2 (.1.2)		Lus10010556 [exp]	8.6	0.8427
AT3G45020			Ribosomal L18p/L5e family prot...		Lus10021433 [exp]	9.8	0.8719
					Lus10034731 [exp]	11.6	0.8877
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10021746 [exp]	16.4	0.8176
AT2G43190			ribonuclease P family protein ...		Lus10026483 [exp]	17.9	0.8579
AT5G11500			unknown protein		Lus10038625 [exp]	21.2	0.8450

Compare expression of checked genes

Lus10021581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.