Plant FIBer expression Database

Lus10021582 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19450 660 / 0 RDS1, DGAT1, ATDGAT, AS11, ABX45, TAG1 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017154
[exp]
988 / 0 AT2G19450 697 / 0.0 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G066100
[exp]
717 / 0 AT2G19450 690 / 0.0 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
Potri.006G147600
[exp]
712 / 0 AT2G19450 690 / 0.0 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0517 MBOAT-like PF03062 MBOAT MBOAT, membrane-bound O-acyltransferase family
Representative CDS sequence
>Lus10021582 pacid=23182101 polypeptide=Lus10021582 locus=Lus10021582.g ID=Lus10021582.BGIv1.0 annot-version=v1.0
ATGGCGGTGCTCGACACCCCTGACAATCACATAAACCCCTCTCCCTCCACCTCTGCTATCGACTCCTCCGATCTTAACGGTCTCTCCCTTCGACGTCGTT
CAGTTGCCACTAACTCCGACCAAGGTACTTCTTCCGCCGCTGTAGAATCACTCCACGTGGATCGGCCAGCCGATTCTGATGCGTCCAACCGCGAGGATAA
GAAGATTGACAATCGGGATGGTCAAGTTGCGAGATCGGATATCAAATTCACTTACCGCCCTTCCGTGCCCGCTCACGTCAAGGTTAAAGAGAGTCCGCTT
AGCTCCGGCGCCATTTTTAAGCAGAGCCATGCAGGCCTCTTCAATCTCTGTATTGTAGTCCTAGTGGCAGTCAACAGCAGGCTTATTATCGAGAATATCA
TGAAGTATGGTTGGTTAATTAGAACAGGCTTCTGGTTCAGTTCAAAATCGTTGAGAGATTGGCCTCTTTTCATGTGCTGTCTAACTCTTCCAGTGTTCGC
ACTTGCTGCGTATCTTGTTGAGAAATTGGCGTACCGGAAATATCTCTCTGAACCTATAGTTGTTTCCCTCCACATAATCATCTCCGTGGTAGCAGTTGTA
TACCCTGTTTCAGTGATTCTCAGCTGCGACTCTGCATTTGTATCTGGTGTGACGTTGATGCTTTTTGCTTGTATTGTGTGGTTAAAATTGGTCTCATATG
CTCATACGAACTATGATATGAGAGCAGTTGCCAAGTCAGTTGAAAAGGGAGAAGCACCTTCTGCTGCTTTGAACGTTGATTACTCTTATGACGTTAACTT
CAAGAGCTTGGTGTATTTCATGATTGCTCCAACACTGTGCTATCAGCCAAGCTATCCACGCACTCCATGTATCCGAAAGGGTTGGTTGGTTCATCAGTTC
ATCAAGTTAGTAATATTTACTGGCTTGATGGGATTCATCATAGAGCAATATATCAATCCAATTATACAGAACTCTCAGCATCCTTTTAAAGGGAATCTAT
TATATGGAATCGAGAGGGTTTTGAAACTTTCGGTCCCAAACTTGTATGTATGGCTGTGCATGTTCTATTGCTTCTTCCATCTATGGTTAAATATACTTGC
AGAGCTCCTACGATTTGGTGATAGAGAATTCTACAAAGATTGGTGGAATGCAAAAACTGTTGAAGAATACTGGAGAATGTGGAACATGGTACATCTCTTT
ACTGAGCCAGTTCATAAATGGATGGTTCGCCATATCTATTTCCCATGTCTGCGGCACAACATTCCTAAGGGAGTAGCAATACTTATTGCCTTCTTTGTTT
CTGCAGCATTTCATGAGTTGTGTATCGCAGTTCCTTGCCACATATTCAAGCTGTGGGCTTTTCTTGGGATTATGTTCCAGATTCCACTGGTGTGGATAAC
AAACGTTCTACAGCAGAAGTTCAAGAGCTCAATGGTGGGGAACATGATATTCTGGTCAATGTTCTGCATATTTGGTCAACCAATGTGTGTGCTTCTATAC
TATCATGACTTGATGAACAGGAATGGGAAAGATGGAATCTGA
AA sequence
>Lus10021582 pacid=23182101 polypeptide=Lus10021582 locus=Lus10021582.g ID=Lus10021582.BGIv1.0 annot-version=v1.0
MAVLDTPDNHINPSPSTSAIDSSDLNGLSLRRRSVATNSDQGTSSAAVESLHVDRPADSDASNREDKKIDNRDGQVARSDIKFTYRPSVPAHVKVKESPL
SSGAIFKQSHAGLFNLCIVVLVAVNSRLIIENIMKYGWLIRTGFWFSSKSLRDWPLFMCCLTLPVFALAAYLVEKLAYRKYLSEPIVVSLHIIISVVAVV
YPVSVILSCDSAFVSGVTLMLFACIVWLKLVSYAHTNYDMRAVAKSVEKGEAPSAALNVDYSYDVNFKSLVYFMIAPTLCYQPSYPRTPCIRKGWLVHQF
IKLVIFTGLMGFIIEQYINPIIQNSQHPFKGNLLYGIERVLKLSVPNLYVWLCMFYCFFHLWLNILAELLRFGDREFYKDWWNAKTVEEYWRMWNMVHLF
TEPVHKWMVRHIYFPCLRHNIPKGVAILIAFFVSAAFHELCIAVPCHIFKLWAFLGIMFQIPLVWITNVLQQKFKSSMVGNMIFWSMFCIFGQPMCVLLY
YHDLMNRNGKDGI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G19450 RDS1, DGAT1, AT... TRIACYLGLYCEROL BIOSYNTHESIS D... Lus10021582
[exp]
0 1
AT1G45207 Remorin family protein (.2) Lus10009750
[exp]
2.2 0.8784
AT1G30330 ARF ARF6 auxin response factor 6 (.1.2) Lus10017641
[exp]
4.7 0.8672
AT4G00090 Transducin/WD40 repeat-like su... Lus10004027
[exp]
6.6 0.8164
AT4G00740 QUA3 QUASIMODO 3, S-adenosyl-L-meth... Lus10018848
[exp]
7.1 0.8660
AT4G01810 Sec23/Sec24 protein transport ... Lus10007190
[exp]
8.0 0.8589
AT5G67470 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, ... Lus10019298
[exp]
8.4 0.8523
AT2G42520 P-loop containing nucleoside t... Lus10000849
[exp]
10.8 0.8406
AT3G03770 Leucine-rich repeat protein ki... Lus10020303
[exp]
12.2 0.8220
AT2G26730 Leucine-rich repeat protein ki... Lus10033065
[exp]
15.0 0.8434
AT1G06230 GTE4 global transcription factor gr... Lus10034067
[exp]
17.4 0.8212

Lus10021582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.