Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13920 539 / 0 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 535 / 0 EIF4A-2 eif4a-2 (.1.2) AT1G72730 515 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G19760 335 / 3e-114 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G51380 315 / 2e-106 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 179 / 2e-52 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G45810 178 / 6e-52 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 177 / 7e-52 ATRH8 RNAhelicase-like 8 (.1.2) AT5G11170 153 / 2e-43 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G11200 153 / 2e-43 DEAD/DEAH box RNA helicase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017153 [exp] 600 / 0 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10037620 [exp] 549 / 0 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10006878 [exp] 547 / 0 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017407 [exp] 340 / 9e-116 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 332 / 1e-112 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10040975 [exp] 203 / 1e-63 AT3G19760 494 / 1e-176 eukaryotic initiation factor 4A-III (.1) Lus10014783 [exp] 179 / 2e-52 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10017804 [exp] 179 / 3e-52 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 176 / 5e-51 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G043700 [exp] 565 / 0 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.018G061050 [exp] 564 / 0 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 561 / 0 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 558 / 0 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.007G070000 [exp] 339 / 1e-115 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.005G093900 [exp] 338 / 2e-115 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.002G157500 [exp] 182 / 1e-53 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 179 / 2e-52 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.018G028600 [exp] 153 / 3e-43 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.006G253100 [exp] 151 / 1e-42 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10021583 pacid=23182094 polypeptide=Lus10021583 locus=Lus10021583.g ID=Lus10021583.BGIv1.0 annot-version=v1.0 ATGGCAGGACTAGCACCCGAGGGATCCCAGTTTGATGCTAAGCAGTACGATGCCAAGATGAGTGAACTGATTTCAGCTGATGGTCAGGACTACTTCGCTT CCTATGATGAGGTTCATGAAACCTTCGACTCTATGGGTTTGCAGGAGAATCTTCTCAGAGGAATTTATGCATATGGCTTTGAGAAGCCGTCTGCAATCCA ACAGAGGGGGATTGTTCCCTTTTGCAAGGGACTAGATGTTATTCAACAGGCTCAATCTGGAACTGGAAAGACTGCTACTTTCTGTTCTGGTATCCTGCAA CAACTTAATTATGGTATAGTTGAATGCCAAGCTCTGGTCTTGGCACCCACTAGGGAGCTGGCTCAGCAGATTGAAAAGGTTATGCGAGCTCTTGGTGATT ATCTTGGAGTCAAGGTACATGCATGTGTTGGTGGAACTAGTGTTCGTGAAGACCAACGGATCCTCTCAAGTGGAGTACATGTTGTTGTTGGTACTCCTGG TCGTGTGTTCGATATGCTCCGCAGACAGTCCCTTCGTGCTGATTCGATCAAGATGTTTGTGTTGGATGAAGCTGATGAGATGCTTTCTCGTGGATTTAAG GATCAAATCTACGACATCTTCCAGCTTTTGCCACCAAACATCCAAGTTGGCGTGTTCTCTGCAACAATGCCACCTGAGGCTCTTGATATTACAAGGAAAT TCATGAACAAACCAGTTAGGATTCTGGTGAAGCGTGAGGAGCTGACCTTGGAGGGTATCAAACAGTTCCATGTGAATGTGGACAAAGAAGAATGGAAGTT GGAGACACTGTGTGATCTTTATGAGACCTTAGCCATTACTCAGAGTGTTATCTTTGTGAACACCAGGCGCAAAGGAAAGGTGTGGCTACCAACTTTGTGA
AA sequence Show only first row Show all	>Lus10021583 pacid=23182094 polypeptide=Lus10021583 locus=Lus10021583.g ID=Lus10021583.BGIv1.0 annot-version=v1.0 MAGLAPEGSQFDAKQYDAKMSELISADGQDYFASYDEVHETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ QLNYGIVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRADSIKMFVLDEADEMLSRGFK DQIYDIFQLLPPNIQVGVFSATMPPEALDITRKFMNKPVRILVKREELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKGKVWLPTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10021583 [exp]	0	1
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031185 [exp]	1.4	0.9215
AT1G73240			unknown protein		Lus10026210 [exp]	4.9	0.8943
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10022168 [exp]	5.5	0.8860
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	5.5	0.9178
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10032704 [exp]	6.0	0.8888
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10017585 [exp]	8.3	0.9101
AT4G20980			Eukaryotic translation initiat...		Lus10011171 [exp]	10.2	0.8946
AT2G46290			Transducin/WD40 repeat-like su...		Lus10021857 [exp]	11.4	0.8811
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014014 [exp]	12.1	0.8927
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031477 [exp]	13.6	0.8892

Compare expression of checked genes

Lus10021583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.