Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19490 521 / 0 recA DNA recombination family protein (.1) AT3G32920 277 / 3e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G10140 281 / 2e-91 RECA3 RECA homolog 3 (.1) AT1G79050 268 / 1e-85 recA DNA recombination family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017151 [exp] 731 / 0 AT2G19490 538 / 0.0 recA DNA recombination family protein (.1) Lus10018037 [exp] 290 / 1e-93 AT3G10140 385 / 2e-131 RECA homolog 3 (.1) Lus10042033 [exp] 285 / 6e-93 AT3G10140 378 / 4e-130 RECA homolog 3 (.1) Lus10026204 [exp] 271 / 4e-87 AT1G79050 642 / 0.0 recA DNA recombination family protein (.1.2) Lus10042462 [exp] 271 / 5e-87 AT1G79050 637 / 0.0 recA DNA recombination family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148700 [exp] 550 / 0 AT2G19490 535 / 0.0 recA DNA recombination family protein (.1) Potri.018G067900 [exp] 538 / 0 AT2G19490 547 / 0.0 recA DNA recombination family protein (.1) Potri.016G057700 [exp] 307 / 2e-101 AT3G10140 423 / 2e-147 RECA homolog 3 (.1) Potri.006G048000 [exp] 301 / 4e-99 AT3G10140 427 / 5e-149 RECA homolog 3 (.1) Potri.001G438900 [exp] 259 / 2e-82 AT1G79050 609 / 0.0 recA DNA recombination family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00154 [flax] [poplar] RecA recA bacterial DNA recombination protein
Representative CDS sequence Show only first row Show all	>Lus10021585 pacid=23182080 polypeptide=Lus10021585 locus=Lus10021585.g ID=Lus10021585.BGIv1.0 annot-version=v1.0 ATGGCGAGGCTACTTCTCAGGAACAGTTTGTTTCTCAAGACGTTTATCGTACCAGAGGGATTGTTGGGAGGAGTTTTGGGAACATCTCGCGTCTGCAACT TTGCCACTAAAGGTAGAAGAAAATCAAAGTCCGATGGAAGTGAATCTAGTGAGGATGATTTGTCAAAGAGAGAGGTAGTGTTGCAACAAGCTATTGATCA TATTAATAGCACATTTGGGAAGGGATCTATTATGTGGTTTGGGCGGGATATTGCTCCAAGAAATACTCCAGTTGTGTCCACCGGTTCTCTCCTTCTTGAC GTAGCTCTTGGAACTGGTGGGTATCCAAAGGGACGTGTGGTAGAGATTTATGGTCCAGAGGCCTCTGGCAAAACCACTCTTGCTTTGCATCTAATTGCTG AAGCACAGAAGCAAGGAGCATATTGTGTCTTTGTTGACGCTGAGCATGCGCTTGACTCATCATTGGCTGAGGCAATTGGTGTGAATACTGAGAATTTGCT AATTTCACAACCCGACTGCGGTGAACAAGCTCTTAGCCTTGTAGATACCATAATCCGAAGTGGTTCTGTTGGAGTGGTTGTTGTTGACAGTGTTGCAGCT CTTGTTCCAAAAAGCGAACTTGACGGGGAGATGGGTGATGCTCATATGGCAGTGCAGGCTAGGTTGATGAGCCAGGCACTTCGGAAGTTAAGCCATTCTT TATCAATGTCTCAAACAATTCTGATATTTATAAATCAGGTAAGATCAAAGATTTCTACCTTTGGTGGGTTTGGTGGACCTCAAGAAGTAACTTGTGGAGG CAATGCTCTGAAGTTCTATGCTTCAATGCGCCTGAACATAAAAAGGATAGGGCTTGTCAAGAAGGGAGAAGAGACTGTTGGAAGTAGGGTTCAAGTAAAA GTGGTGAAGAATAAGCTTGCTCCTCCATTCAAAACCATCGAATTTGAGCTGGAGTTTGGGAAAGGAATATGCCAAGCATCAGAGATAATAGAATTGGGGT TAAAACATAAGATAATGACAAAGGCAGGGTCTTTTTACAGTTACGGGGAAAAGCGGTTCCATGGTAAGGATGCGCTGAAGGCATTCATAAATGGGAATGA AGATGCACGTGAAGAAATGAAAATGAAGATCAAAGAGAAGCTAGCAGCAGCAGATGCTGTATATGATGACAAGGAAAGTGCCGAGTCCACAGCGACAGAC GGTAGCGAAATCATAGCGTCAGATTCAACCGACGAAGAGCCTACTGCTATTGAAGCTTAA
AA sequence Show only first row Show all	>Lus10021585 pacid=23182080 polypeptide=Lus10021585 locus=Lus10021585.g ID=Lus10021585.BGIv1.0 annot-version=v1.0 MARLLLRNSLFLKTFIVPEGLLGGVLGTSRVCNFATKGRRKSKSDGSESSEDDLSKREVVLQQAIDHINSTFGKGSIMWFGRDIAPRNTPVVSTGSLLLD VALGTGGYPKGRVVEIYGPEASGKTTLALHLIAEAQKQGAYCVFVDAEHALDSSLAEAIGVNTENLLISQPDCGEQALSLVDTIIRSGSVGVVVVDSVAA LVPKSELDGEMGDAHMAVQARLMSQALRKLSHSLSMSQTILIFINQVRSKISTFGGFGGPQEVTCGGNALKFYASMRLNIKRIGLVKKGEETVGSRVQVK VVKNKLAPPFKTIEFELEFGKGICQASEIIELGLKHKIMTKAGSFYSYGEKRFHGKDALKAFINGNEDAREEMKMKIKEKLAAADAVYDDKESAESTATD GSEIIASDSTDEEPTAIEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19490			recA DNA recombination family ...		Lus10021585 [exp]	0	1
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10018666 [exp]	4.5	0.8177
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	5.9	0.8419
AT5G17440			LUC7 related protein (.1)		Lus10026846 [exp]	10.1	0.8042
AT3G47630			unknown protein		Lus10024227 [exp]	12.3	0.7985
AT5G66540			unknown protein		Lus10042107 [exp]	13.5	0.7486
AT3G62000			S-adenosyl-L-methionine-depend...		Lus10010276 [exp]	14.5	0.7704
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10026026 [exp]	15.4	0.8027
AT2G34670			Protein of unknown function (D...		Lus10036155 [exp]	19.4	0.7962
AT3G51270			protein serine/threonine kinas...		Lus10017941 [exp]	19.8	0.8126
AT5G50310			Galactose oxidase/kelch repeat...		Lus10040895 [exp]	20.9	0.7842

Compare expression of checked genes

Lus10021585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.