Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39930 1182 / 0 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) AT4G09020 600 / 0 ATISA3, ISA3 isoamylase 3 (.1) AT1G03310 318 / 7e-96 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) AT5G04360 86 / 7e-17 ATPU1 ,ATLDA PULLULANASE 1, limit dextrinase (.1) AT5G03650 72 / 1e-12 SBE2.2 starch branching enzyme 2.2 (.1) AT2G36390 69 / 1e-11 SBE2.1, BE3 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) AT3G20440 62 / 1e-09 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017150 [exp] 1009 / 0 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10036474 [exp] 499 / 2e-165 AT4G09020 1005 / 0.0 isoamylase 3 (.1) Lus10017149 [exp] 384 / 2e-129 AT2G39930 296 / 3e-96 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10000661 [exp] 308 / 2e-92 AT1G03310 848 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10027999 [exp] 306 / 1e-91 AT1G03310 833 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10038675 [exp] 75 / 2e-13 AT5G04360 1200 / 0.0 PULLULANASE 1, limit dextrinase (.1) Lus10023878 [exp] 67 / 5e-11 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10000912 [exp] 67 / 6e-11 AT3G20440 1315 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10014382 [exp] 65 / 2e-10 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G070800 [exp] 1286 / 0 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.018G132500 [exp] 1271 / 0 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G100900 [exp] 590 / 0 AT4G09020 1111 / 0.0 isoamylase 3 (.1) Potri.002G219900 [exp] 330 / 3e-100 AT1G03310 919 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Potri.010G229300 [exp] 83 / 6e-16 AT5G04360 1399 / 0.0 PULLULANASE 1, limit dextrinase (.1) Potri.001G359200 [exp] 67 / 3e-11 AT3G20440 1352 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Potri.006G115100 [exp] 65 / 2e-10 AT5G03650 1303 / 0.0 starch branching enzyme 2.2 (.1) Potri.005G251000 [exp] 53 / 1e-06 AT5G03650 828 / 0.0 starch branching enzyme 2.2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain CL0369 [flax] [poplar] GHD PF02922 [flax] [poplar] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Lus10021586 pacid=23182124 polypeptide=Lus10021586 locus=Lus10021586.g ID=Lus10021586.BGIv1.0 annot-version=v1.0 ATGGAGTTGATTCACTCTGCTTCCCGCTCCCTATTCCTTCCCAAATTAACTCTCCACTCTCCAAACTCCTTGGGAGGAGTAAGGACGACGAATTCCGTAC CTTCTCAACTTGTCTCTATAACCGATCCTCGTAGGAATTCTCCCCAGAGGATTTTCATCTGTGCGGCAAGGGAGGCCAGCGTAGAGATCTCGGAGCCTGA CCTGGTCGTTCGAGAGCGTAAATTGAGGCGGTTTCAAGTTTCCCAAGGGCGTCCCGCTCCGTTTGGTGCCATCGCCCGCGACGGTGGCGTGAACTTCTCC GTGTATTCTTCTAATGCCGCTTCTGCTACTCTCTGTTTGATTTCTAAGTCTGATTTGTCTGAGGGTAGAGTGACCGAGGAGATTCCTCTTGATCCTGTTG CTAACAAGACAGGCGACACTTGGCATGCATTCCTTCAAGGCGATTTCAGAGATATATTATACGGTTACCGTTTTGATGGGAAGTTTTCTCCTGAAGATGG CCATTACTTTGATTCTTCAAAGACTATCTTGGATCCTTATGCCAAAGCAGTTGTATCCAGAGCTGAATTCGGTGTCTTAGCCGCAAACGATAATTGCTGG CCGCAAATGGCGTGCATGATACCATCCGCTGAAGATGAGTTTGACTGGGAAGGAGATTTGCCGCTGAAGTATCATCAGAAAGATTTAATTATATACGAGA TGCATGTTCGAGGGTTTACACAGCACGAGTCAAGCGGGGCTGAAAATCCTGGGACTTATCTAGGCGTTGTGGAAAAGCTTGATCACTTAAAAGACCTTGG TGTGAATTGCATAGAATTAATGCCATGCCATGAATTCAATGAGTTGGAGTACTACAAGTACAATTCCGTGATGGGTGATTACAAAATTAACTTTTGGGGA TATTCAACAATCAATTTCTTTTCACCAATGACGAGATATGCTTCTACTGGGACACGTAATTGTGGCCATGACGCAGTACATGAATTCAAGCTTCTCGTTA GAGAAGCACATAAACGAGGAATTGAGGTGTTGATGGACGTTGTTTTCAATCACACAGCAGAAGGAAATGAGAAAGGCCCCACCCTTTCTTTCAGAGGGCT TGACAACAGTGTCTACTACATGGTTGCTCCCAAGGGAGAGTTCTATAATTATTCCGGCTGTGGTAATACATTCAACTGTAATCATCCTGTTGTACGCCAA TTCATAGTTGACTGCTTAAGATATTGGGTAATGGAAATGCATGTAGATGGCTTTCGCTTTGATCTTGCTTCGATTATGACAAGGGGCAGTAGTCTATGGG ATGCTGCTAATGTATTTGGAATTCCACAAGAAGGTGAGTTGTTGACGACGGGAACACCTCTTGGCAGCCCCCCACTGATTGACATGATAAGCAATGATCC GATACTCTGTGACGTAAAGCTTATTGCAGAAGCGTGGGATGCTGGAGGATTGTATCAAGTTGGTGAATTTCCTCATTGGCGTATTTGGTCAGAGTGGAAT GGGAAGTATCGGGATGTTGTCAGGCAGTTCATTAAGGGTACGGATGGCTTTTCCGGGGCATTTGCTGAATGCCTATGTGGGAGCCCTAACTTATACCAGG CAGGAGGCAGGAAACCTTGGTATAGCGTCAACTTCGTGTGTGCACATGATGGTTTTACATTGGCTGATTTAGTTACGTACAACGAAAAACATAACTTGGC CAATGGAGAAGACAACAATGACGGAGAAAACCATAATAATAGTTGGAACTGTGGACAGGAGGGAGAGTTCGCGAGCATTTCTGTGAAGAAATTGAGGAAA AGGCAAATGAGGAATTTCTTTCTGTGTCTCATGGTTTCTCAGGGTGTTCCAATGATACACATGGGCGACGAATACGGGCACACAAAGGGAGGAAACAACA ACACATATTGTCTCGATAACTATATAAACTATTTCCGGTGGGACAAGAAGGATGAGTCGTCGGCAGACTTCTTCAGGTTTTGCCGCCTCATGACCAATTT CCGCCAAGAATGCGAATCGTTAGGTTTAAATGATTTTCCAACGGCGGAGAGGCTACAATGGCACGGTCTTATTGCCGGAGTGCCAGACTGGTCTGAAACA AGCCGATTTGTGGCCTTTACCCTGGTTGACTCGGTGAAAGGAGAGATGTACGTTGGGTTTAATACTAGTCACGTTCCGGTAACGATTTCACTCCCAGAAC GTCCAGGATACAGATGGGAGCCATTGGTGGACACGGGGAAGGCTGCTCCTTTCGACTTTCTTGTGGATGATGTCCCTGGAAGAAAAGTTGCGATTGCACA GCTTTCACACTTTCTGGATGAAAACTTATACCCAATGCTCAGTTACTCATCCATCATTCTCATTCTTACACCAGATGACACCAATAGCATCTGA
AA sequence Show only first row Show all	>Lus10021586 pacid=23182124 polypeptide=Lus10021586 locus=Lus10021586.g ID=Lus10021586.BGIv1.0 annot-version=v1.0 MELIHSASRSLFLPKLTLHSPNSLGGVRTTNSVPSQLVSITDPRRNSPQRIFICAAREASVEISEPDLVVRERKLRRFQVSQGRPAPFGAIARDGGVNFS VYSSNAASATLCLISKSDLSEGRVTEEIPLDPVANKTGDTWHAFLQGDFRDILYGYRFDGKFSPEDGHYFDSSKTILDPYAKAVVSRAEFGVLAANDNCW PQMACMIPSAEDEFDWEGDLPLKYHQKDLIIYEMHVRGFTQHESSGAENPGTYLGVVEKLDHLKDLGVNCIELMPCHEFNELEYYKYNSVMGDYKINFWG YSTINFFSPMTRYASTGTRNCGHDAVHEFKLLVREAHKRGIEVLMDVVFNHTAEGNEKGPTLSFRGLDNSVYYMVAPKGEFYNYSGCGNTFNCNHPVVRQ FIVDCLRYWVMEMHVDGFRFDLASIMTRGSSLWDAANVFGIPQEGELLTTGTPLGSPPLIDMISNDPILCDVKLIAEAWDAGGLYQVGEFPHWRIWSEWN GKYRDVVRQFIKGTDGFSGAFAECLCGSPNLYQAGGRKPWYSVNFVCAHDGFTLADLVTYNEKHNLANGEDNNDGENHNNSWNCGQEGEFASISVKKLRK RQMRNFFLCLMVSQGVPMIHMGDEYGHTKGGNNNTYCLDNYINYFRWDKKDESSADFFRFCRLMTNFRQECESLGLNDFPTAERLQWHGLIAGVPDWSET SRFVAFTLVDSVKGEMYVGFNTSHVPVTISLPERPGYRWEPLVDTGKAAPFDFLVDDVPGRKVAIAQLSHFLDENLYPMLSYSSIILILTPDDTNSI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10021586 [exp]	0	1
AT1G22460			O-fucosyltransferase family pr...		Lus10020943 [exp]	6.0	0.7545
AT5G40270			HD domain-containing metal-dep...		Lus10022228 [exp]	8.3	0.7809
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10016745 [exp]	8.7	0.7844
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10038675 [exp]	11.8	0.7716
AT4G36050			endonuclease/exonuclease/phosp...		Lus10028455 [exp]	12.6	0.7632
AT2G46915			Protein of unknown function (D...		Lus10007214 [exp]	23.2	0.7790
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Lus10034919 [exp]	24.2	0.7639
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Lus10019894 [exp]	24.8	0.7738
AT2G40116			Phosphoinositide-specific phos...		Lus10009894 [exp]	30.5	0.7189
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019587 [exp]	31.1	0.7354

Compare expression of checked genes

Lus10021586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.