Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G40087 42 / 0.0002 Plant transposase (Ptta/En/Spm family) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024976 [exp] 176 / 2e-53 AT1G40087 91 / 5e-20 Plant transposase (Ptta/En/Spm family) (.1) Lus10003828 [exp] 108 / 3e-29 ND / Lus10034923 [exp] 102 / 7e-28 ND / Lus10040052 [exp] 102 / 1e-27 ND / Lus10022535 [exp] 97 / 7e-26 ND / Lus10006526 [exp] 97 / 2e-24 ND 38 / 0.005 Lus10014862 [exp] 93 / 1e-23 ND / Lus10032838 [exp] 80 / 5e-18 AT1G40087 46 / 9e-06 Plant transposase (Ptta/En/Spm family) (.1) Lus10035238 [exp] 78 / 1e-17 AT1G40087 42 / 2e-04 Plant transposase (Ptta/En/Spm family) (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03004 [flax] [poplar] Transposase_24 Plant transposase (Ptta/En/Spm family)
Representative CDS sequence Show only first row Show all	>Lus10021587 pacid=23182141 polypeptide=Lus10021587 locus=Lus10021587.g ID=Lus10021587.BGIv1.0 annot-version=v1.0 ATGGTCGTTGCTTCAGACTCTTCCTCCGTCGTCCCCCCTTTGTCTTCCTCTATCTCATGGTCTCATATCGTCTCTGATCCAAAGACTGATCTTCAGTTTA CTTCGATCCCGCCTGATGCGATTGTTAATGGTGTGTTGGTGATTCCGCAAGCTATTGTGGATATTGGCCTCAAGAAACTCCAATCGGCGGTAGTTGTGCA GTTTCTTGCTGATTGGAGGAAAATGTCGTCACAAATCAATACACGTGCCTGGGAGCACTTTGTGTTGAGAAACAAGGGTAGTCGGATACTTCAGAAGGAA AATCATAAAGGAGGATCAAGATCGTGGGATCGATATATCGAGAAAACAATCGAGAAGACTGGTAAGCCTCCCTCTAGAGGTCAGATGTTCATCAAGTTCT TCAAGTGGCCGGATGGATCTTTCAAGTCAGAGCATGCTAGAGTTGTGGAATCCATAGAGCAACTAGAGCGTGATGGGGCTCCAACTGAGGTTGGTCCTAA CAATTCTTTGCCTCGAACACTGAATAAGCTAGAGCATCGAGGCCATGTTCGGATGATGGGTTTTGGGTTACCCCCTCCATGGGAAGAAGGTGCAGGTTTT GATGACCTCGCTGAAATGATGGCTAGTGTCACTAATGCTCAACAATGCCAAAGCCAAGGAGAAGGTTGA
AA sequence Show only first row Show all	>Lus10021587 pacid=23182141 polypeptide=Lus10021587 locus=Lus10021587.g ID=Lus10021587.BGIv1.0 annot-version=v1.0 MVVASDSSSVVPPLSSSISWSHIVSDPKTDLQFTSIPPDAIVNGVLVIPQAIVDIGLKKLQSAVVVQFLADWRKMSSQINTRAWEHFVLRNKGSRILQKE NHKGGSRSWDRYIEKTIEKTGKPPSRGQMFIKFFKWPDGSFKSEHARVVESIEQLERDGAPTEVGPNNSLPRTLNKLEHRGHVRMMGFGLPPPWEEGAGF DDLAEMMASVTNAQQCQSQGEG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10021587 [exp]	0	1
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Lus10015370 [exp]	7.1	0.8622
AT1G34220			Regulator of Vps4 activity in ...		Lus10028724 [exp]	12.0	0.8356
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001174 [exp]	14.1	0.8255
AT1G79420			Protein of unknown function (D...		Lus10001755 [exp]	15.8	0.8447
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	16.7	0.8600
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Lus10033016 [exp]	17.5	0.8312
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031780 [exp]	21.5	0.8434
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10016806 [exp]	24.9	0.8154
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10024657 [exp]	31.3	0.8264
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	32.5	0.8178

Compare expression of checked genes

Lus10021587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.