Plant FIBer expression Database

Lus10021589 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G56900 761 / 0 C3HZnF CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
AT1G56290 75 / 9e-14 CwfJ-like family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021219
[exp]
76 / 5e-14 AT1G56290 739 / 0.0 CwfJ-like family protein (.1)
Lus10022209
[exp]
75 / 1e-13 AT1G56290 751 / 0.0 CwfJ-like family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G152100
[exp]
862 / 0 AT5G56900 852 / 0.0 CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
Potri.001G415900
[exp]
70 / 2e-12 AT1G56290 768 / 0.0 CwfJ-like family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04676 CwfJ_C_2 Protein similar to CwfJ C-terminus 2
CL0265 HIT PF04677 CwfJ_C_1 Protein similar to CwfJ C-terminus 1
Representative CDS sequence
>Lus10021589 pacid=23182090 polypeptide=Lus10021589 locus=Lus10021589.g ID=Lus10021589.BGIv1.0 annot-version=v1.0
ATGGCTGCTCCTCTTCGTATTCTCCTCGTTGGCGACGTCTTCGGCCGCCTCAACCAGCTCTTTAAGCGTGTCCAATCGGTGAACAAATCAGCTGGCCCCT
TCGATGCTCTCTTCTGCGTCGGTCAGTTCTTCCCTGACTCGCTGGAGCGGTTGGAGGAGTTCATGAATTATGTCGAAGGTCGCTCTCAGGTCCTCCTTCC
TACCTATTTCATTGGTGACTTCGGTGTTGGTGCCCCTAAAGTGTTGTCCACTACCTCCAAGAACTCTGCCAACTTAGGGTTTAAAACGGACGGTCTTACG
GTCTGTGACAACCTATACTGGCTGAGAGGCAGCGGCAAGTTCTCTTTCCATGGTTTGTCAATTGCTTACTTGTCTGGTAGGAGAGCAGCAGATGCTCAGC
CGTTTGGTACCTACAGTCAAGATGATGTTGATGCTTTGCGGGCATTGGCCGAAGAATCTGGAGTAGTTGACCTTGGGGTCACAAATAGAGCATCTTTGTC
AGACATTCCAGCCGAAGTATCAGATTCATCAGGCTGTGATTCTACTATATCAGAGTTAGTAGCGGAGATCAAACCAAGGTATCATATTGTAGGTACTAAA
GATGTATTCTATACCCGTGAAGCTTATGCCAACCCTGATGCTATGCATATCACCCGGTTTTTAGGCCTGGCATCAGTTGGCAATCCAAAGAAACAGAAAT
TTATCCATGCCATAAATCCTACTCCAGCGTCTAGAATGTCAGATTCTGAAATTAGCATGAAGCCTCCAAACACTACATTATCACCATATATCTTTGTGGA
GCAAACAGGTGAACTTAAAGCAAACAGTAAGAGGCCTGGTGATAGCACGTCTGATTCACAGTATTGGCGATATGATGTTGTCAGTAAGAGACAGAAATCT
GGAGATACGGATGGAAACAAATGTTTTAAATTCATTTATTCTGGTTCTTGTCCGAAAGGAGAATCATGCAACTTTCAGCATCATATGGATACAAGAGAAC
AATTTCGCAGGGGAGTTTGCCTTGATCTACTTCTCAAAGGAAAATGTGGAAAAGGTCCAGAATGCAAATTTAAGCATGAATTGCAAACTGAGGCAGAGAG
CTCTCCTCGGAGGAGAGTTGGTTCTGAAAGCAGTAGTACTCACAGGGCAAAAGAATGTTGGTTTTGTTTATCAAGCTCACATGTGGAGTCTCATTTAATC
ATTAGTGTGGGAGAAAACTACTATTGTGCACTTGCAAAGGGTCCTCTCGTTCAGGATCATGTATTAATAATACCAATTGAGCATCTGCCCAACACCTTTT
CTCTTTCTGAAGAATGTGAATCTGAGCTGGTTAGACTCCATGGTAGCCTCCAGTTATACTTTAAGAATCAGCATAAAGAAGCAGTACTATTTCAATGGGT
TTCCAAACGGGTTTCCCATGCCAATCTTCAGGTTGTTCCCATTCCTTCGTCTAAGGTGGCTGCTGTTCCTAAAATTTTTAACATGGCTGCTGAAAGAATG
GGTTTTAAACTCGTTGCCAAGAAATTCGACAATATTTTAGATGGAAGAAGATGGTTGAGGTCACAATTTGATGAGAATAGTAGCTTCTTCTACGCTGAGA
CCCCTGATGGCATAATACTAACACATTCAGTGGAGGAGAATGAAAAATTTCCAGCACAATTTGGGCGTGAGGTATTAGCAGGATTGCTGAACATGCCAGA
TAAGGCGGATTGGAGGAATTGTAGCCTAACCAAGGAGGAGGAAACTAGAGCTGTCGAAGAATTTAAGAAAGGTTTCAAAGAGCTAGATCCAACGCAATGA
AA sequence
>Lus10021589 pacid=23182090 polypeptide=Lus10021589 locus=Lus10021589.g ID=Lus10021589.BGIv1.0 annot-version=v1.0
MAAPLRILLVGDVFGRLNQLFKRVQSVNKSAGPFDALFCVGQFFPDSLERLEEFMNYVEGRSQVLLPTYFIGDFGVGAPKVLSTTSKNSANLGFKTDGLT
VCDNLYWLRGSGKFSFHGLSIAYLSGRRAADAQPFGTYSQDDVDALRALAEESGVVDLGVTNRASLSDIPAEVSDSSGCDSTISELVAEIKPRYHIVGTK
DVFYTREAYANPDAMHITRFLGLASVGNPKKQKFIHAINPTPASRMSDSEISMKPPNTTLSPYIFVEQTGELKANSKRPGDSTSDSQYWRYDVVSKRQKS
GDTDGNKCFKFIYSGSCPKGESCNFQHHMDTREQFRRGVCLDLLLKGKCGKGPECKFKHELQTEAESSPRRRVGSESSSTHRAKECWFCLSSSHVESHLI
ISVGENYYCALAKGPLVQDHVLIIPIEHLPNTFSLSEECESELVRLHGSLQLYFKNQHKEAVLFQWVSKRVSHANLQVVPIPSSKVAAVPKIFNMAAERM
GFKLVAKKFDNILDGRRWLRSQFDENSSFFYAETPDGIILTHSVEENEKFPAQFGREVLAGLLNMPDKADWRNCSLTKEEETRAVEEFKKGFKELDPTQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G56900 C3HZnF CwfJ-like family protein / zin... Lus10021589
[exp]
0 1
AT5G23880 ATCPSF100, EMB1... ENHANCED SILENCING PHENOTYPE 5... Lus10035061
[exp]
1.7 0.9341
AT1G06560 NOL1/NOP2/sun family protein (... Lus10007337
[exp]
2.0 0.9334
AT1G10930 ATSGS1, RECQL4A... DNA helicase (RECQl4A) (.1) Lus10015467
[exp]
6.9 0.9039
AT1G26370 RID1 RNA helicase family protein (.... Lus10037067
[exp]
9.2 0.9042
AT5G25757 RNA polymerase I-associated fa... Lus10037897
[exp]
9.2 0.9176
AT5G11240 transducin family protein / WD... Lus10033468
[exp]
10.4 0.9043
AT3G44600 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 ... Lus10020573
[exp]
11.5 0.9143
AT2G42260 PYM, UVI4 POLYCHOME, uv-b-insensitive 4 ... Lus10008728
[exp]
14.4 0.8981
AT5G63110 RPD3B, CAT1, AX... RNA-MEDIATED TRANSCRIPTIONAL S... Lus10043337
[exp]
15.4 0.8420
AT1G31660 unknown protein Lus10032891
[exp]
18.2 0.9035

Lus10021589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.