Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20500 180 / 2e-59 Glutaredoxin family protein (.1) AT1G77370 135 / 5e-42 Glutaredoxin family protein (.1) AT5G63030 94 / 1e-25 GRXC1 glutaredoxin C1, Thioredoxin superfamily protein (.1) AT5G40370 93 / 3e-25 GRXC2 glutaredoxin C2, Glutaredoxin family protein (.1.2) AT4G28730 92 / 3e-24 GrxC5 glutaredoxin C5, Glutaredoxin family protein (.1) AT2G20270 92 / 4e-24 Thioredoxin superfamily protein (.1.2) AT3G21460 67 / 3e-15 Glutaredoxin family protein (.1) AT4G15700 67 / 4e-15 Thioredoxin superfamily protein (.1) AT4G15690 66 / 9e-15 Thioredoxin superfamily protein (.1) AT4G15680 66 / 1e-14 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017148 [exp] 265 / 5e-93 AT5G20500 182 / 2e-60 Glutaredoxin family protein (.1) Lus10028355 [exp] 136 / 3e-42 AT1G77370 171 / 2e-56 Glutaredoxin family protein (.1) Lus10022253 [exp] 106 / 1e-30 AT5G40370 162 / 2e-53 glutaredoxin C2, Glutaredoxin family protein (.1.2) Lus10013089 [exp] 105 / 2e-30 AT5G40370 162 / 2e-53 glutaredoxin C2, Glutaredoxin family protein (.1.2) Lus10001237 [exp] 94 / 2e-25 AT5G63030 171 / 2e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1) Lus10042104 [exp] 94 / 2e-25 AT5G63030 177 / 1e-58 glutaredoxin C1, Thioredoxin superfamily protein (.1) Lus10022844 [exp] 90 / 2e-23 AT4G28730 177 / 3e-57 glutaredoxin C5, Glutaredoxin family protein (.1) Lus10011915 [exp] 71 / 3e-16 AT4G28730 154 / 4e-48 glutaredoxin C5, Glutaredoxin family protein (.1) Lus10012815 [exp] 67 / 5e-15 AT3G21460 171 / 3e-57 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G133400 [exp] 194 / 3e-65 AT5G20500 182 / 2e-60 Glutaredoxin family protein (.1) Potri.007G017300 [exp] 138 / 8e-43 AT1G77370 163 / 8e-53 Glutaredoxin family protein (.1) Potri.002G254100 [exp] 99 / 8e-27 AT4G28730 176 / 2e-56 glutaredoxin C5, Glutaredoxin family protein (.1) Potri.012G082800 [exp] 97 / 9e-27 AT5G63030 155 / 6e-50 glutaredoxin C1, Thioredoxin superfamily protein (.1) Potri.015G078900 [exp] 92 / 8e-25 AT5G63030 171 / 3e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1) Potri.001G347700 [exp] 88 / 2e-23 AT5G40370 158 / 1e-51 glutaredoxin C2, Glutaredoxin family protein (.1.2) Potri.002G208500 [exp] 68 / 1e-15 AT3G62950 171 / 5e-57 Thioredoxin superfamily protein (.1) Potri.014G134200 [exp] 68 / 2e-15 AT3G62950 169 / 4e-56 Thioredoxin superfamily protein (.1) Potri.008G214500 [exp] 66 / 6e-15 AT3G21460 177 / 2e-59 Glutaredoxin family protein (.1) Potri.002G208400 [exp] 63 / 9e-14 AT2G30540 160 / 8e-53 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10021590 pacid=23182085 polypeptide=Lus10021590 locus=Lus10021590.g ID=Lus10021590.BGIv1.0 annot-version=v1.0 ATGGCCAAAGTATCGTCGATATTCGCAGTTATTGCAACTCTGGTAGCTATAGGTGCGGTATCTTTTAGCTGGCCGTCAGCGTGTGCCGCTTCTCCGGAGT CCGCTTTTGTCAAGAAGACCATCTCCTCTCACCAGATTGTTATATTTTCCAAGTCCTATTGCCCATACTGCAGGAGGGCTAAAGCTGTATTCAAAGAGTT GAACCAAACACCATATGTGGTTGAGCTTGATGAGAGAGACGATGGGCATGACATCCAGGGTGCACTGGGTCAACTAGTAGGGAAACGCACTGTACCTCAG GTTTTCATAAACGGTAAACACATTGGTGGCTCTGACGATACTGTTGAAGCATATGAAAATGGTGAACTGGAAACTCTTCTAGGGATTGACGTCGACGACG AAAAGGATGATCTATGA
AA sequence Show only first row Show all	>Lus10021590 pacid=23182085 polypeptide=Lus10021590 locus=Lus10021590.g ID=Lus10021590.BGIv1.0 annot-version=v1.0 MAKVSSIFAVIATLVAIGAVSFSWPSACAASPESAFVKKTISSHQIVIFSKSYCPYCRRAKAVFKELNQTPYVVELDERDDGHDIQGALGQLVGKRTVPQ VFINGKHIGGSDDTVEAYENGELETLLGIDVDDEKDDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20500			Glutaredoxin family protein (....		Lus10021590 [exp]	0	1
AT4G31050			Biotin/lipoate A/B protein lig...		Lus10025664 [exp]	7.5	0.7983
AT3G52500			Eukaryotic aspartyl protease f...		Lus10021292 [exp]	7.7	0.8004
AT3G10910			RING/U-box superfamily protein...		Lus10022743 [exp]	7.7	0.8069
AT3G06740	GATA	GATA15	GATA transcription factor 15 (...		Lus10037721 [exp]	9.3	0.7690
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10010846 [exp]	13.5	0.8300
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	16.9	0.8009
AT3G23760			unknown protein		Lus10043212 [exp]	19.1	0.8204
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10016545 [exp]	21.5	0.7871
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10001665 [exp]	21.6	0.7705
AT2G43630			unknown protein		Lus10005311 [exp]	29.0	0.7891

Compare expression of checked genes

Lus10021590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.