Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43890 67 / 6e-14 Pectin lyase-like superfamily protein (.1) AT3G59850 67 / 8e-14 Pectin lyase-like superfamily protein (.1) AT2G43870 67 / 8e-14 Pectin lyase-like superfamily protein (.1) AT2G43860 59 / 7e-11 Pectin lyase-like superfamily protein (.1) AT1G05650 57 / 3e-10 Pectin lyase-like superfamily protein (.1) AT1G65570 56 / 6e-10 Pectin lyase-like superfamily protein (.1) AT2G43880 56 / 7e-10 Pectin lyase-like superfamily protein (.1) AT1G05660 53 / 8e-09 Pectin lyase-like superfamily protein (.1) AT1G78400 51 / 4e-08 Pectin lyase-like superfamily protein (.1) AT1G43080 50 / 4e-08 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002124 [exp] 119 / 6e-33 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10022530 [exp] 96 / 3e-24 AT2G43870 471 / 4e-166 Pectin lyase-like superfamily protein (.1) Lus10002126 [exp] 91 / 2e-22 AT2G43870 461 / 1e-162 Pectin lyase-like superfamily protein (.1) Lus10011417 [exp] 89 / 3e-22 AT2G43870 191 / 1e-58 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 72 / 2e-15 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 68 / 3e-14 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 67 / 6e-14 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 118 / 2e-12 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10040610 [exp] 48 / 3e-07 AT5G17200 346 / 7e-116 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G003500 [exp] 92 / 1e-22 AT3G59850 498 / 4e-177 Pectin lyase-like superfamily protein (.1) Potri.017G004500 [exp] 92 / 1e-22 AT3G59850 520 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G005300 [exp] 92 / 1e-22 AT3G59850 504 / 3e-179 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 91 / 2e-22 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.017G005900 [exp] 91 / 3e-22 AT3G59850 486 / 3e-172 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 90 / 4e-22 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1) Potri.017G005600 [exp] 89 / 1e-21 AT3G59850 496 / 5e-176 Pectin lyase-like superfamily protein (.1) Potri.007G144100 [exp] 89 / 1e-21 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 86 / 1e-20 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.010G248200 [exp] 85 / 3e-20 AT2G43870 534 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10021591 pacid=23182079 polypeptide=Lus10021591 locus=Lus10021591.g ID=Lus10021591.BGIv1.0 annot-version=v1.0 ATGAAAGGACCCTGTAAGAACAATGGCATCTTCATCAGAATCGACGACACCCTCGTCGCCCCTTCCGACATTCGGGCCATCGGGAATAACCCCAATTGGA TCGGTTTCAAGTACGTTAACGTTGTCACCATCTCCGGCAGCGTCCTAGACGGTCAGGGCATTGGTTTGTGGGCTTGCAAAACCGCCGGCCGAAAATACTC CACCGACGTTACGTCTGGGATTTTCGTTATGCAAGAATGTGTTGGTGAGCGGGTTGACTTCTCTGGACAGCCAGATGTTCCACATAGTGATAAACTACTT ATTGGGAGTTTGGGAAAGGATGTGAAGGAGGCGGGAGTTCAGAACGTGACGATTAAGTCGACGACATTTACCGGAATGACGAACGGGGTGAGGATCAAGG CATGA
AA sequence Show only first row Show all	>Lus10021591 pacid=23182079 polypeptide=Lus10021591 locus=Lus10021591.g ID=Lus10021591.BGIv1.0 annot-version=v1.0 MKGPCKNNGIFIRIDDTLVAPSDIRAIGNNPNWIGFKYVNVVTISGSVLDGQGIGLWACKTAGRKYSTDVTSGIFVMQECVGERVDFSGQPDVPHSDKLL IGSLGKDVKEAGVQNVTIKSTTFTGMTNGVRIKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43870			Pectin lyase-like superfamily ...		Lus10021591 [exp]	0	1

Compare expression of checked genes

Lus10021591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.