Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38670 496 / 2e-175 PECT1 phosphorylethanolamine cytidylyltransferase 1 (.1) AT4G15130 106 / 8e-26 ATCCT2 phosphorylcholine cytidylyltransferase2 (.1) AT2G32260 106 / 1e-25 ATCCT1 phosphorylcholine cytidylyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017147 [exp] 711 / 0 AT2G38670 506 / 1e-179 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10027604 [exp] 594 / 0 AT2G38670 546 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10022942 [exp] 589 / 0 AT2G38670 539 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10036229 [exp] 105 / 1e-25 AT2G32260 400 / 3e-141 phosphorylcholine cytidylyltransferase (.1) Lus10027337 [exp] 106 / 2e-25 AT2G32260 428 / 4e-151 phosphorylcholine cytidylyltransferase (.1) Lus10010471 [exp] 106 / 2e-25 AT2G32260 466 / 3e-166 phosphorylcholine cytidylyltransferase (.1) Lus10003808 [exp] 106 / 2e-25 AT2G32260 468 / 8e-167 phosphorylcholine cytidylyltransferase (.1) Lus10038368 [exp] 104 / 4e-25 AT2G32260 398 / 2e-140 phosphorylcholine cytidylyltransferase (.1) Lus10039039 [exp] 71 / 7e-14 AT2G32260 248 / 5e-82 phosphorylcholine cytidylyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132700 [exp] 583 / 0 AT2G38670 510 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G071000 [exp] 575 / 0 AT2G38670 521 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G113900 [exp] 474 / 1e-166 AT2G38670 668 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.016G143600 [exp] 472 / 7e-166 AT2G38670 682 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.001G159400 [exp] 110 / 2e-27 AT2G32260 418 / 4e-148 phosphorylcholine cytidylyltransferase (.1) Potri.003G075000 [exp] 110 / 4e-27 AT2G32260 417 / 1e-147 phosphorylcholine cytidylyltransferase (.1) Potri.016G017500 [exp] 103 / 1e-24 AT2G32260 421 / 2e-148 phosphorylcholine cytidylyltransferase (.1) Potri.006G006700 [exp] 102 / 3e-24 AT2G32260 443 / 1e-157 phosphorylcholine cytidylyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10021592 pacid=23182138 polypeptide=Lus10021592 locus=Lus10021592.g ID=Lus10021592.BGIv1.0 annot-version=v1.0 ATGGCTTACGAGAGCAGTAATTGGATCTGGGATGGGGTTTATTGTCACCCGCATCTCTTCGGAGGTCTGATGCTGACAGCTGCGTTGCTAGGTTTGTCCA CAAGCTATTTCAGCGGAATTGGCTTCTCCTCCTCTTTCCCCTTCATTTTCCCCGATCTGGGAATCTTCCACAAGAAGAGGCGTGAGAAGAAGAAGCGGGT TCGAGTCTACATGGATGGTTGTTTTGATCTTATGCATTACGGTCATGCTAATGCTTTGAGGCAAGCTAAGGCATTAGGGGATGAGTTGGTTGTTGGTGTT GTAAGCGATGAGGAGATCATTGCTAATAAGGGCCCCCCTGTTTTGCCCATGGAGGAGAGGCTGGCCCTGGTGAGTGGATTGAAATGGGTGGATCAAGTCA TCGCCGATGCTCCTTATGCTATTACCGAACAGTTCATGCATACTCTTTTCAATGACCATAAGATTGACTACATTATACATGGTGATGATCCTTGCCTCCT CCCTGATGGATCCGATGCTTATGCCTTGGCCAAAATAGCCGGCCGTTACAAGCAAATTAAACGCACTGAAGGTGTTTCCAGTACTGATATTGTAGGAAGG ATACTTTTGACTGCAAAGGATGATAACGTTCAAGAAAACCATGTTGGATCATCTTCTATACCTGCCGATAGAGGAGTATCACAGTTCCTTCTAACATCTA GACGGATAGTACAGTTTTCTAATGGCAAAGGTCCTAGCCCAAACGCTCGTGTTGTCTACATTGATGGAGCCTTTGACTTGTTCCATGCAGGTCATGTTGA GATTCTCAGAAAAGCCAAGCAGCTTGGAGACTTTCTCCTAGTTGGGGTCCACACAGATCAGATTGTTAGTCAACACAGAGGGAAATACTATCCAATAATG CATTTGCATGAGCGTAGTCTCAGTGCTCTAGCATGCAGGTATGTTGATGAAGTCATCATTGGTGCACCCTGGGAAGTTTCCAAGGACGTGATTACAACTT TCAACATATCTGTGGTTGTCCATGGGACCGTGGCAGAACAGAATTACATATCCTCTGGGGAGAGTGATCCTTATGCAGTACCAAAAGCAATGGGGATTTT TCGGTTGCTCGACAGCCCTAAAGACATAACTACTACATCCGTGACCAAACGGATCATTGCTAACCATGAAGCTTACACGGCAAGTCTTAGCTTTTCTCCC TCTTTTGCAATAACTTATATGAATGTGATGTGA
AA sequence Show only first row Show all	>Lus10021592 pacid=23182138 polypeptide=Lus10021592 locus=Lus10021592.g ID=Lus10021592.BGIv1.0 annot-version=v1.0 MAYESSNWIWDGVYCHPHLFGGLMLTAALLGLSTSYFSGIGFSSSFPFIFPDLGIFHKKRREKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGV VSDEEIIANKGPPVLPMEERLALVSGLKWVDQVIADAPYAITEQFMHTLFNDHKIDYIIHGDDPCLLPDGSDAYALAKIAGRYKQIKRTEGVSSTDIVGR ILLTAKDDNVQENHVGSSSIPADRGVSQFLLTSRRIVQFSNGKGPSPNARVVYIDGAFDLFHAGHVEILRKAKQLGDFLLVGVHTDQIVSQHRGKYYPIM HLHERSLSALACRYVDEVIIGAPWEVSKDVITTFNISVVVHGTVAEQNYISSGESDPYAVPKAMGIFRLLDSPKDITTTSVTKRIIANHEAYTASLSFSP SFAITYMNVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10021592 [exp]	0	1
AT4G24530			O-fucosyltransferase family pr...		Lus10015890 [exp]	2.4	0.8447
AT1G73430			sec34-like family protein (.1....		Lus10015940 [exp]	3.9	0.8432
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10009311 [exp]	11.0	0.8347
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010780 [exp]	11.8	0.8256
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	12.6	0.8582
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10024805 [exp]	25.6	0.8247
AT5G50840			unknown protein		Lus10023501 [exp]	27.7	0.8059
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10006161 [exp]	27.9	0.8255
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10013342 [exp]	28.1	0.8291
AT4G31570			unknown protein		Lus10020133 [exp]	28.5	0.8385

Compare expression of checked genes

Lus10021592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.