Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07040 242 / 8e-75 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT5G35390 239 / 1e-73 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 216 / 1e-64 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 214 / 5e-64 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 204 / 2e-60 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 157 / 2e-43 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 153 / 5e-42 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 151 / 5e-41 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G17840 143 / 2e-38 RLK902 receptor-like kinase 902 (.1) AT1G48480 143 / 2e-38 RKL1 receptor-like kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017144 [exp] 418 / 9e-142 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 303 / 1e-97 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 294 / 2e-94 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 211 / 5e-63 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 210 / 1e-62 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 196 / 2e-60 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 198 / 2e-59 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 198 / 4e-58 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034795 [exp] 168 / 4e-48 AT3G20190 445 / 1e-150 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G147300 [exp] 271 / 1e-85 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 271 / 2e-85 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 224 / 3e-68 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 222 / 2e-67 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 207 / 1e-61 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 192 / 3e-58 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 194 / 6e-57 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 160 / 4e-44 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 155 / 1e-42 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G121700 [exp] 154 / 6e-42 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10021595 pacid=23182105 polypeptide=Lus10021595 locus=Lus10021595.g ID=Lus10021595.BGIv1.0 annot-version=v1.0 ATGCCATCAGGCACCAAGAAGCCATCAACAGCAAGTATAGTGTTTGTTGCAATCGTTGGTGCGGTTGCCGTGTGTGGAATAATAGCGGCCGCGTTCATTT TAATGCGGCGTCGCCAGCAAACTATAGATACGATAGAATCAGCGAATGCGCTTGGCATACAAGATGACCCTAACCACATGCCCACATCTCGAGAACCATC TAAAGTAATAGTTGCAGGTGGGGAGGCGACGATGAAACTATCTTTCGTGAGAGAGGATGGGGGAAAGTTTGAGCTGCATGACCTGTTGAAAGCATCAGCG GAATTACTTGGGAGTGGGTGTTTTGGATCATCTTATAAGGCGGCACTTACGTCAGGGAAAGTAATGGTGGTGAAGAGGTTTAAGCAGATGAATAATGTGG GGAGAGAAGAGTTTCATGACCACATGAGAAGGTTAGGGAATTTGAGACACACCAACTTGTTGCCTTTGGTGGCTTACTATTATCGCAAGGAAGAGAAGCT TTTGGTTCATGATTTTGTTCCATATGGAAGCTTGGCCGTCCATCTCCATGGGCATCAAGCACTAGGGCAGCCAAGCTTAGAGTGGGAAAACCGAGTTAAA ATCATAAAGGGAGTAGCGAGAGGACTACTCTACCTGTATAAGGAACTCCCAAGCATAATTGCAGCACACGGGCACTTAAAATCAAACAATGTCCTCCTAG ACGAAGGGGATCATGAGATGGTAAAGTTGGTTAGGATAGGATTGAGTTGTTGTGAAGGCGATGTCAAGAAGAGGCCTGACTTGAAACAAGCGTTAGAGAG GATTGAGGAGATGAAGATTGTCAATGATGATAAAGAGAGTTATGCCGATGATGATTTCTCCTCTATTTACAGTGAAGGGGGTGTTGGTGGTGTAAGGAGA CCATCCACACACTTGTCTGCTGATTTCGACAACCATCCACATGATTCTAATTAA
AA sequence Show only first row Show all	>Lus10021595 pacid=23182105 polypeptide=Lus10021595 locus=Lus10021595.g ID=Lus10021595.BGIv1.0 annot-version=v1.0 MPSGTKKPSTASIVFVAIVGAVAVCGIIAAAFILMRRRQQTIDTIESANALGIQDDPNHMPTSREPSKVIVAGGEATMKLSFVREDGGKFELHDLLKASA ELLGSGCFGSSYKAALTSGKVMVVKRFKQMNNVGREEFHDHMRRLGNLRHTNLLPLVAYYYRKEEKLLVHDFVPYGSLAVHLHGHQALGQPSLEWENRVK IIKGVARGLLYLYKELPSIIAAHGHLKSNNVLLDEGDHEMVKLVRIGLSCCEGDVKKRPDLKQALERIEEMKIVNDDKESYADDDFSSIYSEGGVGGVRR PSTHLSADFDNHPHDSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35390			Leucine-rich repeat protein ki...		Lus10021595 [exp]	0	1
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10002957 [exp]	6.3	1.0000
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10001280 [exp]	7.6	1.0000
AT3G20760			Nse4, component of Smc5/6 DNA ...		Lus10004185 [exp]	7.7	1.0000
					Lus10009800 [exp]	10.0	1.0000
					Lus10011848 [exp]	14.1	1.0000
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	15.0	1.0000
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10012855 [exp]	15.7	1.0000
					Lus10011061 [exp]	16.0	1.0000
AT2G28320			Pleckstrin homology (PH) and l...		Lus10023522 [exp]	16.7	1.0000
					Lus10014487 [exp]	16.9	1.0000

Compare expression of checked genes

Lus10021595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.