Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24370 775 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 742 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G35380 718 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 714 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT1G16760 699 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 694 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 681 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G12000 667 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 637 / 0 protein kinase family protein (.1) AT1G17540 470 / 1e-155 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040573 [exp] 1212 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 965 / 0 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 817 / 0 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 770 / 0 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 738 / 0 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 713 / 0 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 685 / 0 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009896 [exp] 608 / 0 AT2G24370 632 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10033340 [exp] 591 / 0 AT1G16760 800 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078500 [exp] 838 / 0 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 794 / 0 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 728 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G061600 [exp] 693 / 0 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G001700 [exp] 681 / 0 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 677 / 0 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G225300 [exp] 664 / 0 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 618 / 0 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G170901 [exp] 495 / 7e-167 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G233000 [exp] 369 / 1e-115 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10021596 pacid=23182129 polypeptide=Lus10021596 locus=Lus10021596.g ID=Lus10021596.BGIv1.0 annot-version=v1.0 ATGTCGAAGAAGGTATCAGACAAAGAGTACCAACAAGTGGTTGTGGCAGTTGACAAAGATAAAGGAAGTCAAAACGCTTTGAAATGGGCGACTGAGCATC TCGTAAGCAAAGGCCATTCCATTACTCTCCTTCACATCAAACAACGTTCTTCTTCCTCCTCCGTTGCTTCTGGAGAAGATGATACCTATAGACAACCTGT TATTAATGGGCCAGCCAGAGAGTTGTTGTTACCCTTCCGCTGCTTCTGCACCCGCAAAGATCTAAAATGCAGCGAAGTTGTAGTAGAGGATTATGATATA GCCAAAGCAATCGTTGAGTATGTGAATGCGAATTCGGTGGATATTTTGGTTTTAGGTTCCCCATCCAGAGGTGGCCTCGTCAGAAAGTTTAGGGTGACAG ATGTTCCCAGCAACGTGACTAAATTGGTACCGGATTTTTGCACTCTATATGTAATTGGGAAAGGGAAGATCTCATCTGTAAAATCTGCTACTGCTCCTGT CCCTGCTCAACCTAAACCTGCTCCTCCGCCAGTGGCGACTCAATCATCATCTTCTCCGCTTCCTAATCTCTCAAATTCCCCCGAACCTGCTTCCAGGCTT TACCAGAAAGCTGAAAGATCTGCTTACTCGCCTCACAACAACCATGAAGATGATTTCATCAGATCACCTTTCACAAGAGGAAGAGCTTCAATTGCCAAAC TAGCGGAATCCCCAATGCCTGATTCAGACATCTCATTCGTCAGCAGTGGAAGGCCAAGCACCGACTACCAATTCTCATCCTTAAACGATAGTGATGCTGG AAATCGGCTTTCAATTGGCTCTGATTTCGACGTTAGAAGCACTGGATCCTCCTCCTACTCAGGAAACGGCAAGTCTATGGATCTTGGTTCTTTCCAGAAT TTGTCCACCAGCTCCCAAGAAAGTGGCAGACTTTCTTCCTATTATGCTCCAAATCTGGAAGACATGGAAGCTGAAATGAGGAAGCTAAGACAAGAGCTGA GACAAACGATGGAAATGTATAGTTCAGCGTGCAAAGAAGCATTGACAGCAAAACAACAAGCGAGAGAGCTTCACAGGTGGAGAATGGAGGAAGAGCAAAG GTTAGAGGAGGCAAAAATGTCAGAAGAAGCTGCATTGGCTCTGGTGGAGAAGGAGAAAGCCAAATGTAAAGCCGCCCTTGAGGCAGCCGAAGCAGCTGAG AAGATAGCCCATCTTGAAGCTCAGAAGAGAAGAGCTGCAGAGATGAGAGCCATGCAAGACGCTGAAGAGGCAAAGAAGTCATTAGCCTACAATAATGATG TCCGGTACAGGAGATATGATATTGAAGAGATTGAGATGGCAACCAAAGAGTTTGCAAACAATTTAAAGATTGGAGAAGGTGGGTATGGACCAGTGTACAA AGCGTATCTAGATCATACTCCAGTTGCAATCAAAGTCCTACGACCGGATGCAGCTCAAGGGAGGTCACAATTTCAACAAGAGGTAGAAGTCTTGTCATGC ATTCGACATCCTAACATGGTTCTCCTCCTCGGAGCCTGTCCGGAATATGGATGCTTAGTCTACGAATACATGGCCAACGGAAGCCTTGAAGACAGATTGT TAAGAAGAGGGAACACCCCACCTCTGTCATGGCAAGCAAGGTTTCGAATTTCTGCAGAAATAGCCACCAGCCTTTTGTTCCTCCACCAGACTAAGCCGGA ACCACTTGTCCACCGCGATCTCAAGCCTGGGAACATATTGTTAGACAGGAACTTCGTTAGCAAGATCAGTGACGTTGGGCTAGCAAGGCTTGTCCCTCCA TCAGTTGCAGACTCGGTGACACAATATAGGATGACATCAACTGCAGGAACGTTTTGTTACATTGATCCGGAATATCAACAGACAGGAATGCTTGGGGTTA AGTCGGACATATACTCCTTGGGTATAATGTTACTTCAGATTATAACAGCGAAGCCACCAATGGGTCTAACCCATCATGTCCAGAAATCAATTGACAAAGG AACATTCGCAGAGATGCTTGATCCTAGTGTTCCTGACTGGCCTGTTGAGGAGGCCTTAACTTATGCCAATCTGGCTCTTCAATGTGCCGAATTGAGAAAG AAAGATAGACCGGATCTCGGGAAGGTGGTATTGCCGGAGCTAAATAGGCTGAGAGGACTTGCAGAGGACAATACATCATTTGGGGGACACAGCTATGGAG GGAGTACTACAGGGAGCTCTTCAAGCAGCACAAGCCAAGATGTGCTTAGTGATCTCCAGTCTTCTGGCTATGATAGCTCCAGAAGCAGATCTAGTAACTC TTCATATGGTGGAAGAAGATGA
AA sequence Show only first row Show all	>Lus10021596 pacid=23182129 polypeptide=Lus10021596 locus=Lus10021596.g ID=Lus10021596.BGIv1.0 annot-version=v1.0 MSKKVSDKEYQQVVVAVDKDKGSQNALKWATEHLVSKGHSITLLHIKQRSSSSSVASGEDDTYRQPVINGPARELLLPFRCFCTRKDLKCSEVVVEDYDI AKAIVEYVNANSVDILVLGSPSRGGLVRKFRVTDVPSNVTKLVPDFCTLYVIGKGKISSVKSATAPVPAQPKPAPPPVATQSSSSPLPNLSNSPEPASRL YQKAERSAYSPHNNHEDDFIRSPFTRGRASIAKLAESPMPDSDISFVSSGRPSTDYQFSSLNDSDAGNRLSIGSDFDVRSTGSSSYSGNGKSMDLGSFQN LSTSSQESGRLSSYYAPNLEDMEAEMRKLRQELRQTMEMYSSACKEALTAKQQARELHRWRMEEEQRLEEAKMSEEAALALVEKEKAKCKAALEAAEAAE KIAHLEAQKRRAAEMRAMQDAEEAKKSLAYNNDVRYRRYDIEEIEMATKEFANNLKIGEGGYGPVYKAYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSC IRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLLRRGNTPPLSWQARFRISAEIATSLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPP SVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMLLQIITAKPPMGLTHHVQKSIDKGTFAEMLDPSVPDWPVEEALTYANLALQCAELRK KDRPDLGKVVLPELNRLRGLAEDNTSFGGHSYGGSTTGSSSSSTSQDVLSDLQSSGYDSSRSRSSNSSYGGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24370			Protein kinase protein with ad...		Lus10021596 [exp]	0	1
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	4.2	0.9720
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	7.3	0.9639
AT1G70460		AtPERK13, RHS10	proline-rich extensin-like rec...		Lus10030879 [exp]	7.7	0.9635
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10028311 [exp]	10.6	0.9594
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10043026 [exp]	13.8	0.9608
					Lus10017917 [exp]	13.9	0.9606
AT5G41810			unknown protein		Lus10003901 [exp]	14.3	0.9630
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10035271 [exp]	14.8	0.9355
AT5G49525			unknown protein		Lus10017078 [exp]	15.5	0.9468
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	17.6	0.9552

Compare expression of checked genes

Lus10021596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.