Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10572 181 / 7e-54 APEM9 ABERRANT PEROXISOME MORPHOLOGY 9, 3-phosphoinositide-dependent protein kinase-1, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040572 [exp] 540 / 0 AT3G10572 229 / 1e-72 ABERRANT PEROXISOME MORPHOLOGY 9, 3-phosphoinositide-dependent protein kinase-1, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078700 [exp] 292 / 2e-96 AT3G10572 251 / 4e-81 ABERRANT PEROXISOME MORPHOLOGY 9, 3-phosphoinositide-dependent protein kinase-1, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021597 pacid=23182135 polypeptide=Lus10021597 locus=Lus10021597.g ID=Lus10021597.BGIv1.0 annot-version=v1.0 ATGCGTCGGAGACGCGGTGGTTTAGAGGATGGTGACGCTGATTACGCAGTGGGAGAAGGGACACATATATTGATGCGAAAGAAAAATCATCTGATACCAT ATTACAGGAAGTTGGAGAGAATTGCGGAAAAAGATATCATTAATAGAGGCCTTCTTGAATATTATAGAGAGGAACTCAAGCTACCTTGTTTGCTCCAAGT ACGAGGAAGGTGCATCTATACCCTCAGCTGTTTGAAAAGAACGCGTTCTGAAAGCACTGTGCAGTTAGAACAAAAGGACGAGCTTTTCCAAGTGAAAGAA TCTGCAGGTATGGTTCTGGTTCAGTCATTGACCGAACTTGGAAGGGCATCGGATATTTTGAGTGAGCAGAAGGAGCTATTTTGTTACTCTGTAGCAATCC CTGCTGAGGTTCTTCTCACTGGGGTCTGTTTTCAAATATCTGCGGGGTCATTGATTGGCTTAAAAGAGTTTCTTGAAGACTTCCTTAGCAAGTGGATATT TGTCGATGGAAGCTTGTATGTTCATGGTGGAGCAGAGTCAACTGTAAAGGTCTATAATGAAGGTGATAGGAGGAATAGATTGGACATTGAAACATTTTTG CCAATTGTGGAGGTATATGCTTGTACATTACTCGGAAAGCATTTAAAAGAGTTCAATGCTGCAATTTCTTGGCTTGAGAAAGCTGCCTTACCCGAGGAGA ATCAACAGGTGCTATTGAGAAGATTGCACTCATGGTGTTGTGTAAAAACCTCCGATGGCGTCCATGGTTCTTCAGTTTCGGCAGAACATAATTTGGATCT TCATGGTTACTCATCAAATTCGGTAAATGATTCAGAAGGATCCTCGAAGGCTGTGAAAGCGAGCTACATGCCTGATGGGGAAAGTGCAAGAATTGTGGAA AAATCCAGTTATAAAAACCATCCTATATGGTGGTTTCGTTGTATCATTGTGAAGCTTGGAAACATGCGTGTGGCTGTAATAAATGGGAAGATAGTTCTTA GTTGTGTTGTGGTTTTCCTGTGTTACGTCCTTCAGAAGAAGCAAGCTGCTTTGACTCGGACTGTGAAGAAGCAGGTTGGGTGGATAAAGAAGTCGATGAT AGAGTTATGGGAGCTTGCGTTTTCGTATCAGGTGAATCCCTTGGCAGCTGTACAGCCTATCACTGCAGCAACACGGCCAGGAAGTTGA
AA sequence Show only first row Show all	>Lus10021597 pacid=23182135 polypeptide=Lus10021597 locus=Lus10021597.g ID=Lus10021597.BGIv1.0 annot-version=v1.0 MRRRRGGLEDGDADYAVGEGTHILMRKKNHLIPYYRKLERIAEKDIINRGLLEYYREELKLPCLLQVRGRCIYTLSCLKRTRSESTVQLEQKDELFQVKE SAGMVLVQSLTELGRASDILSEQKELFCYSVAIPAEVLLTGVCFQISAGSLIGLKEFLEDFLSKWIFVDGSLYVHGGAESTVKVYNEGDRRNRLDIETFL PIVEVYACTLLGKHLKEFNAAISWLEKAALPEENQQVLLRRLHSWCCVKTSDGVHGSSVSAEHNLDLHGYSSNSVNDSEGSSKAVKASYMPDGESARIVE KSSYKNHPIWWFRCIIVKLGNMRVAVINGKIVLSCVVVFLCYVLQKKQAALTRTVKKQVGWIKKSMIELWELAFSYQVNPLAAVQPITAATRPGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10021597 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10033779 [exp]	2.0	0.8688
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	5.5	0.8626
AT1G03670			ankyrin repeat family protein ...		Lus10020209 [exp]	6.7	0.8346
AT1G78760			F-box/RNI-like superfamily pro...		Lus10024701 [exp]	7.5	0.8317
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10036200 [exp]	8.9	0.8441
AT3G12350			F-box family protein (.1.2)		Lus10007749 [exp]	11.4	0.8174
AT1G33970			P-loop containing nucleoside t...		Lus10005300 [exp]	12.2	0.8322
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10003894 [exp]	14.4	0.7925
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10009571 [exp]	15.7	0.8291
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	16.7	0.8253

Compare expression of checked genes

Lus10021597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.