Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26590 305 / 4e-103 RPN13 regulatory particle non-ATPase 13 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040571 [exp] 481 / 5e-172 AT2G26590 343 / 1e-118 regulatory particle non-ATPase 13 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078800 [exp] 357 / 3e-123 AT2G26590 386 / 2e-135 regulatory particle non-ATPase 13 (.1.2.3) Potri.003G027722 [exp] 83 / 9e-20 AT2G26590 92 / 4e-24 regulatory particle non-ATPase 13 (.1.2.3) Potri.003G027520 [exp] 61 / 3e-12 AT2G26590 61 / 1e-12 regulatory particle non-ATPase 13 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF04683 [flax] [poplar] Proteasom_Rpn13 Proteasome complex subunit Rpn13 ubiquitin receptor
Representative CDS sequence Show only first row Show all	>Lus10021598 pacid=23182104 polypeptide=Lus10021598 locus=Lus10021598.g ID=Lus10021598.BGIv1.0 annot-version=v1.0 ATGTCTGCCAGGGAGAGGTCCCTAACTGCTAAGGCGACCAGATCGTCAGTAGTTGGTTGCTCGGTGACATCAGCGATGCTAGCTTCGATCAGGGTGTTAT TGATGGGTGTTGCCATTATGCGAAGAGCTATGGGGGGAGAAGATGTTGATGGGCTGTTTGAGGAGGGTTGCAGTGGAAGACTGAAGGAGAAGAGGTGTGT AGTTGAAGGAGATGGTATAACTTCTGCTGTGCTCTCCTTAGTCGTTTCTGGTCTTAAAGTTTCAAAGGTCTGCTGGCAGGTCATGATGCTGGAATTTCGG GCTGGTAAAATGCACCTGGAGGGCAAAAGGGTTGTCCCTGATCCTCGAAAAGGGCTGGTTCGCATAGCTAGGGGAGACGAGGGATTGATCCATTTTCAGT GGCTTGATCGTGTGCTTAATGTTGTTGAAGATGAACCTAATGCAGAAGGAGATGAGGAGCTATGTACCTCTGTTAACTATCAGATCAATAGACCACTAGA GTTTCTGGACGATGAACCTGATACTTCTGCTCTTCAAATTTCTGAAGACATGGTTGAAGATGAAATTTCGTCACGAGCTGGAAACTTGGTCGCTTCAAAC AGAGGTTCAGATGCAATGAATGATGTGACCTCTTCATCCGGAGCAGTGAAATTGGAAGATTTACAACGAATATTGAGCAATATTGAGCCTGGAGAGAGTG CTGGAGACCCAGATGGAGGCTTTGGACTAGGAGATATCTTTAAGCCTGATCTAATAATGCCATTGATTGCTACACTACCGTTGGAAGAAAGATTAGCATC TTTCCTGCCTGAGGGTCCGTGGACCCCAGAGGATGTTCTGGAGTTGTTCCAAAGCCCGCCTTTCCGTCAACAAGTAGATTCTTTCACATATGTATTGAAG ACTGGCCAGATTGATTTGTCACAGTTTGGGGTTGATCCCAGTAAATACAGATTCACTGTATCGTCATTTCTGGAGGCTCTTGAAGAATCAGTAGCGAAGA AAGCAGAGGAAAACAAAGACTTAAGATCTGGGTCTCAGAATGACCCCATGGACGAGACCCATTGA
AA sequence Show only first row Show all	>Lus10021598 pacid=23182104 polypeptide=Lus10021598 locus=Lus10021598.g ID=Lus10021598.BGIv1.0 annot-version=v1.0 MSARERSLTAKATRSSVVGCSVTSAMLASIRVLLMGVAIMRRAMGGEDVDGLFEEGCSGRLKEKRCVVEGDGITSAVLSLVVSGLKVSKVCWQVMMLEFR AGKMHLEGKRVVPDPRKGLVRIARGDEGLIHFQWLDRVLNVVEDEPNAEGDEELCTSVNYQINRPLEFLDDEPDTSALQISEDMVEDEISSRAGNLVASN RGSDAMNDVTSSSGAVKLEDLQRILSNIEPGESAGDPDGGFGLGDIFKPDLIMPLIATLPLEERLASFLPEGPWTPEDVLELFQSPPFRQQVDSFTYVLK TGQIDLSQFGVDPSKYRFTVSSFLEALEESVAKKAEENKDLRSGSQNDPMDETH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10021598 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Lus10018406 [exp]	1.4	0.9336
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	2.4	0.9035
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Lus10003115 [exp]	5.5	0.8906
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	8.8	0.9060
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Lus10004922 [exp]	10.8	0.9029
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10016578 [exp]	10.9	0.8815
AT5G59140			BTB/POZ domain-containing prot...		Lus10040746 [exp]	11.5	0.8884
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10004816 [exp]	12.0	0.8712
					Lus10009514 [exp]	12.7	0.8781
AT3G52230			unknown protein		Lus10028838 [exp]	13.5	0.8964

Compare expression of checked genes

Lus10021598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.