Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010518 [exp] 86 / 1e-20 ND / Lus10035493 [exp] 71 / 1e-13 AT4G11450 462 / 2e-151 Protein of unknown function (DUF3527) (.1) Lus10040056 [exp] 60 / 7e-11 AT5G28823 41 / 2e-04 unknown protein Lus10040594 [exp] 59 / 2e-10 ND / Lus10004792 [exp] 56 / 4e-09 ND / Lus10030065 [exp] 56 / 5e-09 ND / Lus10001095 [exp] 52 / 6e-08 ND 38 / 0.002 Lus10001304 [exp] 50 / 6e-07 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10007392 [exp] 47 / 8e-07 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021602 pacid=23182109 polypeptide=Lus10021602 locus=Lus10021602.g ID=Lus10021602.BGIv1.0 annot-version=v1.0 ATGGCGAACAGACTGTGGGGGTATGAGGGTGAAATCGAGCTCTCTGAACTCTCGGATGTATTCTTCCTCATTGAATTCCCGTCAGTTCCCCTCAGTGAAT GGCTCCTCTATAACAAGGGAATTGGATGGTTGGTGAGCCATTTTGGTCGCCCAATTCAGAAGTTGGTTCGTTCTGGTCTAAATGTTAATGTTTGTGCGTT AATACCACCGGAAAAGGTTTGTCCTGCTAGTCTCTCAATCATCGTGGATGACACTGTGGTTACTATCCCGATTGAGACTCCACAGGCTATGATGTATCGT CAGAAAGTGGTTGCTGCTACTAAACCCATGATGGCTGTCAAGAAATCTCAGTGGAAGGTGAAGTCCCAGCTTACATTTAATGCTTCGACTACTTCTTCTA CAGGCAATGCTTCTGAGTCTCGATTGAGAGGGGAGGAAGCACCTGGGTCGTCTAGTGGGGAGCGAGCTGGAAGGGGAGCTTTGGCATCTCCTAAGACTTC TAAGGAAGTGGAGGGGGATGCTATGGTTAAACAGGTTGGAAGGGTTGAAACTCGCGTAGTGGAGACTGTTCCCCTGAGCCCTGATTCTGTCATTGAACAG CCGGTATGTAGTGTGGTTGAGGAGGCTATTTCGATGGAGTCGGAGGATGAAATTGATGAGGAGATCATTATGAGCATCTCCCTATTGCAACTCTCCTACT GTCACCAAACCAGAGCAAGCAACACTTGA
AA sequence Show only first row Show all	>Lus10021602 pacid=23182109 polypeptide=Lus10021602 locus=Lus10021602.g ID=Lus10021602.BGIv1.0 annot-version=v1.0 MANRLWGYEGEIELSELSDVFFLIEFPSVPLSEWLLYNKGIGWLVSHFGRPIQKLVRSGLNVNVCALIPPEKVCPASLSIIVDDTVVTIPIETPQAMMYR QKVVAATKPMMAVKKSQWKVKSQLTFNASTTSSTGNASESRLRGEEAPGSSSGERAGRGALASPKTSKEVEGDAMVKQVGRVETRVVETVPLSPDSVIEQ PVCSVVEEAISMESEDEIDEEIIMSISLLQLSYCHQTRASNT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021602 [exp]	0	1
AT1G43690			ubiquitin interaction motif-co...		Lus10005002 [exp]	23.7	0.7461
AT5G21040		FBX2	F-box protein 2 (.1.2)		Lus10008402 [exp]	32.6	0.7359
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	40.2	0.7343
AT5G51150			Mitochondrial import inner mem...		Lus10032508 [exp]	41.5	0.7322
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10017670 [exp]	44.9	0.7073
AT4G34750			SAUR-like auxin-responsive pro...		Lus10012190 [exp]	50.5	0.7112
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10008739 [exp]	58.2	0.7110
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10021140 [exp]	63.1	0.6967
AT1G64650			Major facilitator superfamily ...		Lus10003219 [exp]	66.1	0.7043
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10005459 [exp]	89.3	0.6746

Compare expression of checked genes

Lus10021602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.